Wall clock time and date at job start Sun Mar 29 2020 21:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46820 * 48.03564 * 3 2 1 5 5 C 1.37093 * 119.99774 * 264.13587 * 4 3 2 6 6 H 1.08005 * 119.99786 * 197.43756 * 5 4 3 7 7 C 1.38946 * 120.00302 * 17.43547 * 5 4 3 8 8 N 1.31411 * 120.00146 * 21.53396 * 7 5 4 9 9 Si 1.86799 * 120.00147 * 201.53253 * 7 5 4 10 10 H 1.48507 * 109.46901 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47101 * 119.99800 * 9 7 5 12 12 H 1.48497 * 109.47435 * 240.00293 * 9 7 5 13 13 C 1.34778 * 119.99898 * 84.14394 * 4 3 2 14 14 O 1.21289 * 119.99893 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99923 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.46766 * 180.02562 * 15 13 4 17 17 C 1.53778 * 113.61446 * 85.86755 * 16 15 13 18 18 C 1.54053 * 86.98931 * 140.01673 * 17 16 15 19 19 C 1.53784 * 113.61098 * 183.47291 * 16 15 13 20 20 H 4.40645 * 5.51424 * 180.02562 * 4 1 2 21 21 H 1.08994 * 109.47022 * 288.03612 * 3 2 1 22 22 H 1.08995 * 109.46737 * 168.03761 * 3 2 1 23 23 H 0.97002 * 120.00237 * 179.97438 * 8 7 5 24 24 H 1.08996 * 109.47028 * 60.00311 * 15 13 4 25 25 H 1.08997 * 109.47551 * 300.00577 * 15 13 4 26 26 H 1.08993 * 112.85330 * 314.66813 * 16 15 13 27 27 H 1.08997 * 113.61342 * 254.60917 * 17 16 15 28 28 H 1.09004 * 113.61322 * 25.51514 * 17 16 15 29 29 H 1.09000 * 113.62034 * 220.02641 * 18 17 16 30 30 H 1.08997 * 113.61529 * 89.11268 * 18 17 16 31 31 H 1.09001 * 113.61595 * 334.48012 * 19 16 15 32 32 H 1.09002 * 113.61423 * 105.30262 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1347 -0.9227 -1.0271 5 6 3.4781 -2.2059 -0.6878 6 1 4.0909 -2.7950 -1.3540 7 6 3.0379 -2.7484 0.5132 8 7 1.9862 -2.2418 1.1168 9 14 3.9409 -4.1980 1.2700 10 1 5.0836 -4.5778 0.4008 11 1 4.4464 -3.8194 2.6140 12 1 3.0111 -5.3489 1.3969 13 6 3.2469 -0.5107 -2.3054 14 8 3.6519 -1.2750 -3.1556 15 6 2.8690 0.8997 -2.6783 16 6 3.0879 1.1065 -4.1784 17 6 1.8904 0.6747 -5.0410 18 6 2.1599 1.9264 -5.8977 19 6 2.8109 2.5442 -4.6488 20 1 -1.0499 0.0000 -0.0003 21 1 3.0095 -0.3173 0.9771 22 1 3.0089 1.0061 -0.2130 23 1 1.6787 -2.6209 1.9551 24 1 3.4886 1.6015 -2.1202 25 1 1.8198 1.0705 -2.4377 26 1 4.0418 0.7097 -4.5256 27 1 2.0511 -0.2630 -5.5730 28 1 0.9378 0.7046 -4.5120 29 1 1.2534 2.4405 -6.2171 30 1 2.8602 1.7537 -6.7149 31 1 2.1095 3.0843 -4.0128 32 1 3.7143 3.1153 -4.8629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300904765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:13 Heat of formation + Delta-G solvation = 25.776932 kcal Electronic energy + Delta-G solvation = -15037.176429 eV Core-core repulsion = 12578.659429 eV Total energy + Delta-G solvation = -2458.516999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78517 -39.15133 -36.97528 -34.06248 -33.00410 -31.23999 -28.20756 -26.65499 -26.38676 -24.19744 -20.79599 -20.13512 -19.67207 -18.37437 -17.83396 -16.75821 -16.29196 -16.16469 -15.74299 -15.22259 -14.54732 -14.38911 -13.97020 -13.62112 -13.44220 -13.25557 -12.83787 -12.62541 -12.47861 -12.25695 -12.15439 -11.42601 -11.19567 -11.12997 -11.05434 -10.99841 -10.61724 -10.23009 -9.80559 -8.31319 -5.91269 1.34548 1.41446 1.54808 1.93084 2.17029 2.33630 2.39521 3.05721 3.22628 3.79246 3.82617 3.89530 3.92495 4.05634 4.24398 4.54298 4.62250 4.74833 4.82424 4.91435 4.94482 4.98473 5.08572 5.14174 5.21862 5.43043 5.46935 5.48231 5.69409 6.08847 6.47600 7.14979 7.17943 7.46308 8.04361 8.67500 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037948 B = 0.008263 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.674296 B = 3387.646974 C = 3847.939109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.152 4.152 3 C 0.234 3.766 4 N -0.458 5.458 5 C -0.353 4.353 6 H 0.071 0.929 7 C 0.002 3.998 8 N -0.873 5.873 9 Si 0.982 3.018 10 H -0.276 1.276 11 H -0.263 1.263 12 H -0.281 1.281 13 C 0.440 3.560 14 O -0.629 6.629 15 C -0.110 4.110 16 C -0.100 4.100 17 C -0.144 4.144 18 C -0.128 4.128 19 C -0.121 4.121 20 H 0.232 0.768 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.271 0.729 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 10.384 -3.367 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.154 4.154 3 C 0.111 3.889 4 N -0.177 5.177 5 C -0.481 4.481 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.510 5.510 9 Si 0.806 3.194 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.207 1.207 13 C 0.231 3.769 14 O -0.516 6.516 15 C -0.150 4.150 16 C -0.119 4.119 17 C -0.182 4.182 18 C -0.165 4.165 19 C -0.159 4.159 20 H 0.249 0.751 21 H 0.109 0.891 22 H 0.117 0.883 23 H 0.081 0.919 24 H 0.120 0.880 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.279 9.974 -3.577 10.672 hybrid contribution 0.072 -1.383 0.602 1.510 sum -1.206 8.590 -2.974 9.170 Atomic orbital electron populations 1.25133 0.96351 1.03469 1.01686 1.23484 0.95023 0.97640 0.99230 1.18310 0.84594 0.92375 0.93577 1.43977 1.56357 1.11061 1.06264 1.19577 1.31585 0.91704 1.05235 0.91065 1.25943 0.95487 1.01248 0.97432 1.70184 1.19917 1.42983 1.17950 0.85065 0.78246 0.77733 0.78355 1.20091 1.18820 1.20656 1.21211 0.82536 0.91606 0.81576 1.90456 1.52770 1.58834 1.49549 1.21567 1.02783 0.92522 0.98138 1.22294 0.98949 0.98271 0.92385 1.23003 0.98072 0.98226 0.98852 1.22803 1.01417 0.95701 0.96615 1.22934 1.01530 0.94219 0.97183 0.75098 0.89105 0.88301 0.91882 0.87959 0.89522 0.90972 0.93995 0.90756 0.89820 0.89880 0.88798 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.84 19.25 74.32 1.43 -8.41 16 2 C -0.15 -6.70 10.88 31.13 0.34 -6.36 16 3 C 0.23 10.34 4.91 84.58 0.42 10.76 16 4 N -0.46 -23.89 2.60 -645.41 -1.68 -25.57 16 5 C -0.35 -20.40 9.33 84.04 0.78 -19.61 16 6 H 0.07 4.46 7.39 -2.91 -0.02 4.44 16 7 C 0.00 0.11 4.87 84.93 0.41 0.52 16 8 N -0.87 -46.10 9.48 21.66 0.21 -45.89 16 9 Si 0.98 42.76 29.60 68.60 2.03 44.79 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.44 22.03 7.56 87.66 0.66 22.70 16 14 O -0.63 -36.59 15.44 -3.06 -0.05 -36.64 16 15 C -0.11 -4.02 4.13 29.85 0.12 -3.90 16 16 C -0.10 -3.30 3.11 -10.27 -0.03 -3.33 16 17 C -0.14 -4.58 7.65 31.21 0.24 -4.34 16 18 C -0.13 -2.95 8.09 31.22 0.25 -2.70 16 19 C -0.12 -2.79 7.64 31.12 0.24 -2.56 16 20 H 0.23 7.12 7.80 -4.42 -0.03 7.08 16 21 H 0.09 4.28 6.44 -2.39 -0.02 4.27 16 22 H 0.10 3.50 6.69 -2.39 -0.02 3.48 16 23 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 24 H 0.10 3.15 7.41 -2.39 -0.02 3.13 16 25 H 0.09 3.05 7.24 -2.39 -0.02 3.03 16 26 H 0.07 2.70 7.73 -2.39 -0.02 2.68 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 2.34 7.92 -2.38 -0.02 2.32 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -68.47 273.44 6.47 -62.00 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.09 Total: 18.54 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 4.87 Total: -17.23 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.47 Total: -71.46 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.05 Total: -36.64 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.47 6.47 -62.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300904765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.773 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds