Wall clock time and date at job start Sun Mar 29 2020 21:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47585 * 341.18324 * 3 2 1 5 5 C 1.37104 * 119.99762 * 264.17043 * 4 3 2 6 6 H 1.08003 * 119.99367 * 197.37673 * 5 4 3 7 7 C 1.38941 * 120.00424 * 17.37579 * 5 4 3 8 8 N 1.31415 * 119.99793 * 21.58092 * 7 5 4 9 9 Si 1.86798 * 120.00265 * 201.58054 * 7 5 4 10 10 H 1.48506 * 109.47054 * 90.00033 * 9 7 5 11 11 H 1.48502 * 109.47284 * 210.00083 * 9 7 5 12 12 H 1.48494 * 109.47167 * 330.00164 * 9 7 5 13 13 C 1.34774 * 120.00192 * 84.16929 * 4 3 2 14 14 O 1.21295 * 120.00260 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99845 * 359.97438 * 13 4 3 16 16 H 1.09000 * 115.55290 * 325.58912 * 15 13 4 17 17 C 1.53004 * 117.49326 * 111.25922 * 15 13 4 18 18 C 1.52996 * 60.00050 * 107.51422 * 17 15 13 19 19 C 1.53002 * 117.49886 * 252.51129 * 18 17 15 20 20 C 1.52999 * 117.50085 * 107.48835 * 18 17 15 21 21 H 4.40643 * 5.51460 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47250 * 221.18390 * 3 2 1 23 23 H 1.09002 * 109.47627 * 101.18442 * 3 2 1 24 24 H 0.97002 * 120.00338 * 179.97438 * 8 7 5 25 25 H 1.09003 * 117.49472 * 215.00391 * 17 15 13 26 26 H 1.08999 * 117.50245 * 0.02562 * 17 15 13 27 27 H 1.08999 * 109.47213 * 128.61993 * 19 18 17 28 28 H 1.09002 * 109.47053 * 248.62444 * 19 18 17 29 29 H 1.09003 * 109.46782 * 8.61576 * 19 18 17 30 30 H 1.09000 * 109.47181 * 351.37398 * 20 18 17 31 31 H 1.08999 * 109.47242 * 111.37590 * 20 18 17 32 32 H 1.09006 * 109.47478 * 231.37754 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.3065 0.4455 5 6 3.4773 -1.4990 1.7591 6 1 4.0895 -2.3434 2.0393 7 6 3.0367 -0.6077 2.7297 8 7 1.9849 0.1461 2.5006 9 14 3.9393 -0.4811 4.3602 10 1 5.0072 0.5457 4.2564 11 1 2.9820 -0.0935 5.4272 12 1 4.5465 -1.7947 4.6932 13 6 3.2483 -2.3197 -0.4359 14 8 3.6527 -3.4021 -0.0670 15 6 2.8714 -2.1083 -1.8796 16 1 2.0369 -1.4289 -2.0530 17 6 3.9996 -2.1197 -2.9131 18 6 3.0249 -3.2962 -2.8316 19 6 3.5491 -4.6085 -2.2449 20 6 1.9952 -3.4396 -3.9540 21 1 -1.0499 -0.0003 0.0003 22 1 3.0089 0.7742 0.6767 23 1 3.0093 0.2002 -1.0081 24 1 1.6771 0.7681 3.1783 25 1 3.9072 -1.4478 -3.7664 26 1 5.0143 -2.2806 -2.5488 27 1 2.8729 -4.9521 -1.4620 28 1 3.6065 -5.3608 -3.0315 29 1 4.5412 -4.4473 -1.8232 30 1 2.0255 -2.5550 -4.5901 31 1 2.2269 -4.3230 -4.5490 32 1 0.9995 -3.5429 -3.5227 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300904787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:01 Heat of formation + Delta-G solvation = 53.187218 kcal Electronic energy + Delta-G solvation = -15221.910162 eV Core-core repulsion = 12764.581761 eV Total energy + Delta-G solvation = -2457.328400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.29412 -36.79786 -34.87127 -32.07410 -31.17766 -28.99387 -27.00894 -26.46661 -25.04655 -22.65071 -19.55259 -18.10298 -17.62301 -16.66639 -16.14007 -14.79750 -14.25759 -14.03388 -13.72484 -13.41955 -13.18355 -12.52144 -12.26665 -12.14307 -11.98658 -11.60385 -11.46430 -11.18494 -11.00050 -10.76809 -10.46727 -10.33151 -9.66485 -9.33596 -9.22794 -9.18645 -8.84440 -8.17334 -7.81960 -6.30470 -3.82221 3.15543 3.26749 3.31330 3.56632 3.86861 4.06653 4.19900 4.37423 4.82045 5.06250 5.18786 5.34711 5.48613 5.50361 5.57115 5.96569 5.97240 5.99618 6.11788 6.21919 6.35513 6.42698 6.47642 6.53079 6.66885 6.78785 7.05500 7.08790 7.58968 8.10353 8.47225 8.83746 9.17977 9.40832 9.98722 10.70519 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033995 B = 0.009516 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.453292 B = 2941.828218 C = 3478.488383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.233 3.767 4 N -0.439 5.439 5 C -0.314 4.314 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.863 5.863 9 Si 0.921 3.079 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.480 3.520 14 O -0.577 6.577 15 C -0.167 4.167 16 H 0.110 0.890 17 C -0.158 4.158 18 C -0.104 4.104 19 C -0.094 4.094 20 C -0.112 4.112 21 H 0.199 0.801 22 H 0.108 0.892 23 H 0.063 0.937 24 H 0.267 0.733 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 0.282 -8.958 8.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.113 4.113 3 C 0.110 3.890 4 N -0.157 5.157 5 C -0.441 4.441 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.501 5.501 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.269 3.731 14 O -0.461 6.461 15 C -0.188 4.188 16 H 0.128 0.872 17 C -0.196 4.196 18 C -0.105 4.105 19 C -0.151 4.151 20 C -0.169 4.169 21 H 0.216 0.784 22 H 0.126 0.874 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.390 -0.102 -8.623 8.633 hybrid contribution -0.158 0.461 1.021 1.132 sum 0.231 0.359 -7.602 7.614 Atomic orbital electron populations 1.24259 0.95371 1.02275 1.06362 1.23239 0.94418 0.98337 0.95301 1.18251 0.84131 0.88572 0.98065 1.43654 1.55970 1.07747 1.08310 1.19670 1.30086 1.12807 0.81519 0.87839 1.25280 0.95204 0.97478 0.99460 1.70101 1.19701 1.24754 1.35522 0.86013 0.79162 0.78858 0.81215 1.20376 1.21152 1.19450 1.19185 0.83808 0.84198 0.85894 1.90505 1.51179 1.24684 1.79777 1.22402 1.01723 1.02981 0.91722 0.87215 1.23136 0.95308 1.01228 0.99905 1.21466 0.99673 0.91391 0.97960 1.21257 1.02317 0.92891 0.98659 1.21348 0.97912 1.01371 0.96283 0.78438 0.87401 0.91930 0.92209 0.88952 0.88719 0.91479 0.94519 0.91719 0.92749 0.92268 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.58 19.25 29.55 0.57 -5.01 16 2 C -0.11 -2.55 10.73 -37.13 -0.40 -2.95 16 3 C 0.23 5.28 4.80 -6.83 -0.03 5.24 16 4 N -0.44 -11.27 2.60 -117.94 -0.31 -11.57 16 5 C -0.31 -8.71 9.33 -14.93 -0.14 -8.85 16 6 H 0.10 3.02 7.38 -52.48 -0.39 2.64 16 7 C 0.03 0.78 4.86 -17.47 -0.08 0.70 16 8 N -0.86 -22.91 9.48 55.50 0.53 -22.38 16 9 Si 0.92 20.66 29.60 -169.99 -5.03 15.63 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 13 C 0.48 11.82 7.33 -10.99 -0.08 11.74 16 14 O -0.58 -15.68 12.76 5.54 0.07 -15.61 16 15 C -0.17 -3.25 4.52 -91.77 -0.42 -3.67 16 16 H 0.11 2.08 6.73 -51.93 -0.35 1.73 16 17 C -0.16 -2.55 9.52 -26.73 -0.25 -2.81 16 18 C -0.10 -1.76 2.70 -154.51 -0.42 -2.18 16 19 C -0.09 -1.69 8.09 37.16 0.30 -1.39 16 20 C -0.11 -1.51 9.85 37.16 0.37 -1.15 16 21 H 0.20 3.41 7.80 -54.10 -0.42 2.99 16 22 H 0.11 2.56 6.44 -51.93 -0.33 2.22 16 23 H 0.06 1.20 6.98 -51.93 -0.36 0.84 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 26 H 0.09 1.59 8.05 -51.93 -0.42 1.17 16 27 H 0.07 1.36 7.25 -51.93 -0.38 0.98 16 28 H 0.04 0.54 7.92 -51.93 -0.41 0.13 16 29 H 0.06 1.26 7.02 -51.93 -0.36 0.89 16 30 H 0.05 0.65 7.90 -51.93 -0.41 0.24 16 31 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 272.66 15.07 4.11 4.11 Total: -1.00 -30.31 272.66 -5.44 -35.75 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.22 Total: 4.38 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.59 Total: -10.31 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.22 Total: -33.95 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.07 Total: -15.61 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.31 -5.44 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300904787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.940 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds