Wall clock time and date at job start Sun Mar 29 2020 21:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38466 * 119.99714 * 2 1 4 4 C 1.39408 * 119.53371 * 359.45537 * 3 2 1 5 5 C 1.36845 * 119.38342 * 179.74703 * 4 3 2 6 6 C 1.40401 * 118.49148 * 0.51177 * 5 4 3 7 7 C 1.47438 * 120.48483 * 179.74692 * 6 5 4 8 8 O 1.21620 * 120.00001 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00176 * 179.97438 * 7 6 5 10 10 C 1.36909 * 120.00513 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99299 * 359.97438 * 10 9 7 12 12 C 1.39007 * 120.00445 * 179.97438 * 10 9 7 13 13 N 1.31382 * 120.00190 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00150 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46920 * 59.99788 * 14 12 10 16 16 H 1.48497 * 109.47103 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46814 * 299.99948 * 14 12 10 18 18 C 1.39628 * 119.03290 * 359.72912 * 6 5 4 19 19 N 1.31669 * 120.51099 * 0.02562 * 18 6 5 20 20 H 1.09009 * 109.47454 * 300.27394 * 1 2 3 21 21 H 1.08998 * 109.47492 * 60.27689 * 1 2 3 22 22 H 1.08998 * 109.47377 * 180.27879 * 1 2 3 23 23 H 0.97001 * 119.99790 * 179.71956 * 2 1 3 24 24 H 1.07995 * 120.30803 * 359.97438 * 4 3 2 25 25 H 1.08008 * 120.75722 * 180.23762 * 5 4 3 26 26 H 0.97008 * 119.99662 * 359.97438 * 9 7 6 27 27 H 0.96998 * 120.00798 * 179.97438 * 13 12 10 28 28 H 1.08002 * 119.74346 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.1992 0.0000 4 6 1.4504 2.4007 -0.0115 5 6 2.1376 3.5841 -0.0062 6 6 3.5410 3.5436 -0.0003 7 6 4.3254 4.7920 0.0000 8 8 3.7570 5.8672 -0.0055 9 7 5.6722 4.7417 0.0063 10 6 6.4006 5.9010 0.0070 11 1 5.8958 6.8558 0.0021 12 6 7.7897 5.8491 0.0140 13 7 8.4037 4.6876 0.0205 14 14 8.7834 7.4309 0.0143 15 1 8.4480 8.2260 1.2228 16 1 10.2322 7.1052 0.0231 17 1 8.4600 8.2188 -1.2021 18 6 4.1831 2.3037 0.0058 19 7 3.4832 1.1884 0.0055 20 1 -0.3634 0.5181 0.8876 21 1 -0.3634 0.5095 -0.8924 22 1 -0.3634 -1.0276 0.0050 23 1 1.9500 -0.8401 0.0041 24 1 0.3705 2.3977 -0.0208 25 1 1.6124 4.5279 -0.0111 26 1 6.1255 3.8841 0.0110 27 1 9.3730 4.6514 0.0250 28 1 5.2622 2.2591 0.0100 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306156051.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:39 Heat of formation + Delta-G solvation = -21.079963 kcal Electronic energy + Delta-G solvation = -14141.308420 eV Core-core repulsion = 11577.219210 eV Total energy + Delta-G solvation = -2564.089210 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42666 -39.73485 -36.65010 -36.08798 -33.47823 -33.38935 -31.09157 -27.74865 -26.66107 -24.35226 -23.89953 -21.31928 -20.15007 -18.95494 -17.91380 -17.75106 -16.64792 -15.90034 -15.87942 -15.65942 -15.26118 -15.24519 -14.76715 -13.96396 -13.95958 -13.63217 -13.39813 -12.94302 -12.88466 -12.44159 -12.11525 -11.59533 -11.19191 -10.82900 -10.79063 -10.27377 -10.09206 -8.72447 -8.51685 -5.97091 -0.00911 0.36507 1.42434 1.43827 1.54346 2.14654 2.22997 2.29080 2.92437 3.16840 3.33913 3.58969 3.99856 4.04981 4.21343 4.39102 4.52045 4.70038 4.71620 4.96272 5.02681 5.27813 5.38689 5.46952 5.96088 6.05537 6.52962 6.53710 7.05396 7.12204 7.47160 8.03065 8.65623 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.068165 B = 0.005935 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.667280 B = 4716.955118 C = 5112.475111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.717 5.717 3 C 0.399 3.601 4 C -0.230 4.230 5 C 0.003 3.997 6 C -0.240 4.240 7 C 0.481 3.519 8 O -0.640 6.640 9 N -0.557 5.557 10 C -0.338 4.338 11 H 0.085 0.915 12 C -0.011 4.011 13 N -0.914 5.914 14 Si 1.000 3.000 15 H -0.270 1.270 16 H -0.268 1.268 17 H -0.270 1.270 18 C 0.172 3.828 19 N -0.560 5.560 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.107 0.893 23 H 0.411 0.589 24 H 0.169 0.831 25 H 0.139 0.861 26 H 0.396 0.604 27 H 0.282 0.718 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 -10.732 -0.020 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.348 5.348 3 C 0.161 3.839 4 C -0.254 4.254 5 C -0.023 4.023 6 C -0.248 4.248 7 C 0.270 3.730 8 O -0.529 6.529 9 N -0.192 5.192 10 C -0.467 4.467 11 H 0.103 0.897 12 C -0.212 4.212 13 N -0.554 5.554 14 Si 0.822 3.178 15 H -0.195 1.195 16 H -0.192 1.192 17 H -0.195 1.195 18 C 0.013 3.987 19 N -0.279 5.279 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.126 0.874 23 H 0.247 0.753 24 H 0.187 0.813 25 H 0.157 0.843 26 H 0.232 0.768 27 H 0.091 0.909 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.199 -10.884 -0.022 16.349 hybrid contribution 0.781 0.869 0.007 1.168 sum -11.418 -10.015 -0.015 15.188 Atomic orbital electron populations 1.21925 0.76547 1.05039 1.02188 1.44360 1.07269 1.04252 1.78953 1.18860 0.88109 0.88045 0.88917 1.21303 1.02295 0.90174 1.11635 1.21226 0.91891 0.99496 0.89731 1.20688 0.95887 0.93760 1.14482 1.18167 0.82463 0.88881 0.83454 1.90530 1.71116 1.32080 1.59221 1.41856 1.04738 1.09377 1.63206 1.19753 0.89431 0.87415 1.50089 0.89747 1.26178 0.97181 1.02128 0.95719 1.69649 1.10991 1.25914 1.48800 0.84897 0.76870 0.76881 0.79141 1.19469 1.19216 1.19458 1.22601 0.99670 0.86051 0.90359 1.67213 1.07017 1.30996 1.22648 0.91823 0.91793 0.87424 0.75341 0.81347 0.84310 0.76833 0.90861 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 9.90 127.77 1.27 2.16 15 2 N -0.72 -13.55 5.86 -366.61 -2.15 -15.70 15 3 C 0.40 11.24 7.64 133.25 1.02 12.26 15 4 C -0.23 -6.28 9.25 22.23 0.21 -6.07 15 5 C 0.00 0.11 9.65 22.47 0.22 0.32 15 6 C -0.24 -10.15 5.89 -19.99 -0.12 -10.27 15 7 C 0.48 25.38 7.72 86.67 0.67 26.05 15 8 O -0.64 -37.87 15.98 -4.09 -0.07 -37.94 15 9 N -0.56 -30.47 5.23 -309.98 -1.62 -32.09 15 10 C -0.34 -19.73 9.68 84.08 0.81 -18.92 15 11 H 0.08 5.19 7.15 -2.91 -0.02 5.17 15 12 C -0.01 -0.61 5.50 84.94 0.47 -0.14 15 13 N -0.91 -49.88 13.05 21.67 0.28 -49.60 15 14 Si 1.00 43.07 29.55 68.60 2.03 45.10 15 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 18 C 0.17 6.61 10.71 85.05 0.91 7.53 15 19 N -0.56 -19.08 10.38 -192.26 -2.00 -21.08 15 20 H 0.06 0.63 7.92 -2.38 -0.02 0.61 15 21 H 0.06 0.63 7.90 -2.39 -0.02 0.61 15 22 H 0.11 0.51 8.14 -2.39 -0.02 0.49 15 23 H 0.41 6.92 8.95 -92.71 -0.83 6.09 15 24 H 0.17 3.20 6.66 -2.91 -0.02 3.18 15 25 H 0.14 4.88 7.73 -2.91 -0.02 4.85 15 26 H 0.40 20.52 5.94 -92.70 -0.55 19.97 15 27 H 0.28 14.29 8.31 -92.71 -0.77 13.52 15 28 H 0.16 5.93 6.41 -2.91 -0.02 5.91 15 Total: -1.00 -71.29 252.43 1.76 -69.53 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.17 Total: 28.84 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 5.45 Total: 12.93 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -5.49 Total: -118.46 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.07 Total: -37.94 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.29 1.76 -69.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306156051.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.452 kcal (2) G-P(sol) polarization free energy of solvation -71.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds