Wall clock time and date at job start Sun Mar 29 2020 22:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46956 * 2 1 4 4 O 1.42902 * 109.47018 * 119.99595 * 2 1 3 5 5 C 1.52990 * 109.47177 * 239.99674 * 2 1 3 6 6 N 1.46497 * 109.47369 * 180.02562 * 5 2 1 7 7 C 1.39687 * 120.00269 * 179.72215 * 6 5 2 8 8 C 1.39337 * 119.95181 * 0.02562 * 7 6 5 9 9 C 1.38473 * 120.42369 * 179.72060 * 8 7 6 10 10 C 1.37689 * 120.32417 * 0.54913 * 9 8 7 11 11 C 1.40747 * 119.89502 * 359.72729 * 10 9 8 12 12 C 1.41405 * 120.21100 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00416 * 204.45161 * 12 11 10 14 14 C 1.39933 * 119.99724 * 24.44500 * 12 11 10 15 15 N 1.30827 * 120.00318 * 17.89701 * 14 12 11 16 16 Si 1.86804 * 119.99884 * 197.89820 * 14 12 11 17 17 H 1.48502 * 109.47289 * 59.99767 * 16 14 12 18 18 H 1.48499 * 109.47263 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47013 * 300.00174 * 16 14 12 20 20 C 1.38278 * 119.95016 * 180.26986 * 7 6 5 21 21 H 1.08998 * 109.47204 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47095 * 300.00278 * 1 2 3 23 23 H 1.08998 * 109.46423 * 59.99986 * 1 2 3 24 24 H 0.96706 * 114.00242 * 300.00279 * 4 2 1 25 25 H 1.08998 * 109.47512 * 60.00096 * 5 2 1 26 26 H 1.09003 * 109.47443 * 300.00027 * 5 2 1 27 27 H 0.96998 * 119.99579 * 359.97438 * 6 5 2 28 28 H 1.08003 * 119.78478 * 359.97438 * 8 7 6 29 29 H 1.07999 * 119.83588 * 180.27936 * 9 8 7 30 30 H 1.08004 * 120.05310 * 179.74450 * 10 9 8 31 31 H 0.97000 * 120.00268 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.16554 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2491 6 7 3.5050 -0.7218 -1.2488 7 6 4.2035 -1.3319 -2.2935 8 6 3.5058 -1.9392 -3.3355 9 6 4.1883 -2.5418 -4.3789 10 6 5.5650 -2.5572 -4.3921 11 6 6.2834 -1.9528 -3.3434 12 6 7.6974 -1.9643 -3.3505 13 1 8.2428 -1.8765 -2.4225 14 6 8.3899 -2.0895 -4.5600 15 7 7.7796 -1.8472 -5.6915 16 14 10.1861 -2.6026 -4.5590 17 1 10.3182 -3.9412 -3.9296 18 1 10.6852 -2.6606 -5.9564 19 1 10.9831 -1.6134 -3.7898 20 6 5.5862 -1.3367 -2.2893 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.7210 -0.2700 1.9981 25 1 1.6768 -0.2075 -2.1392 26 1 1.6767 -1.7490 -1.2491 27 1 3.9900 -0.3017 -0.5214 28 1 2.4258 -1.9363 -3.3315 29 1 3.6379 -3.0058 -5.1840 30 1 6.0928 -3.0321 -5.2059 31 1 8.2597 -1.9336 -6.5298 32 1 6.1281 -0.8694 -1.4803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306175790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:16 Heat of formation + Delta-G solvation = -40.216526 kcal Electronic energy + Delta-G solvation = -14376.255048 eV Core-core repulsion = 11914.876357 eV Total energy + Delta-G solvation = -2461.378691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.23695 -37.20783 -34.65619 -33.00418 -31.19672 -29.67630 -27.99561 -25.17052 -24.85889 -21.66784 -20.44430 -19.94914 -17.47731 -17.23081 -15.57667 -15.42145 -14.85637 -14.49234 -14.23036 -13.30062 -13.16437 -12.91650 -12.61165 -12.40663 -12.10950 -11.93887 -11.49504 -11.12176 -11.05969 -10.76629 -10.52032 -10.37453 -10.09162 -9.69633 -9.25339 -9.13760 -8.65050 -7.31826 -6.65190 -6.11582 -4.24753 2.92542 3.12813 3.16219 3.29509 3.44308 4.01522 4.13702 4.31015 4.78260 4.84817 5.08077 5.12722 5.53889 5.61431 5.87571 5.91002 6.01842 6.16208 6.39104 6.61226 7.10959 7.13152 7.17953 7.41417 7.48044 7.58821 7.86663 7.99014 8.20943 8.32000 8.58429 8.74425 8.86046 9.06663 9.19477 10.30979 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058167 B = 0.005635 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.257448 B = 4967.627333 C = 5328.104825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 H 0.057 0.943 4 O -0.560 6.560 5 C 0.144 3.856 6 N -0.757 5.757 7 C 0.225 3.775 8 C -0.304 4.304 9 C -0.075 4.075 10 C -0.200 4.200 11 C 0.142 3.858 12 C -0.466 4.466 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.793 5.793 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.289 4.289 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.372 0.628 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.391 0.609 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.279 0.721 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.990 3.218 7.179 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.030 3.970 3 H 0.075 0.925 4 O -0.365 6.365 5 C 0.019 3.981 6 N -0.391 5.391 7 C 0.126 3.874 8 C -0.327 4.327 9 C -0.094 4.094 10 C -0.221 4.221 11 C 0.139 3.861 12 C -0.496 4.496 13 H 0.093 0.907 14 C -0.139 4.139 15 N -0.419 5.419 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.313 4.313 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.219 0.781 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.224 0.776 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.865 2.814 6.388 11.283 hybrid contribution 0.606 0.402 0.557 0.917 sum -8.258 3.217 6.945 11.260 Atomic orbital electron populations 1.22440 0.96028 1.03074 1.02502 1.22073 0.92949 0.95579 0.86389 0.92468 1.86649 1.76921 1.57327 1.15584 1.21089 0.83078 0.99756 0.94217 1.44285 1.03344 1.65672 1.25811 1.17497 0.90969 0.91851 0.87070 1.19851 0.96529 1.16543 0.99767 1.20427 0.94717 0.98278 0.95965 1.21166 0.92168 1.06592 1.02160 1.17332 0.92897 0.86265 0.89648 1.19516 0.91554 1.44979 0.93503 0.90698 1.25883 1.00535 0.92442 0.95072 1.69856 1.38485 1.34643 0.98870 0.86419 0.82280 0.80325 0.77921 1.18884 1.20437 1.19128 1.20395 0.90805 1.15134 1.05003 0.91545 0.92275 0.91327 0.78130 0.92049 0.92712 0.77610 0.89803 0.89686 0.86781 0.91042 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.54 37.16 0.35 -1.31 16 2 C 0.09 1.06 3.67 -26.73 -0.10 0.96 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.56 -7.01 13.06 -35.23 -0.46 -7.47 16 5 C 0.14 2.28 4.60 -4.05 -0.02 2.26 16 6 N -0.76 -14.77 5.62 -58.69 -0.33 -15.10 16 7 C 0.22 5.38 6.64 -83.86 -0.56 4.82 16 8 C -0.30 -7.27 9.32 -39.09 -0.36 -7.63 16 9 C -0.07 -1.87 10.01 -39.70 -0.40 -2.27 16 10 C -0.20 -5.51 8.70 -38.83 -0.34 -5.85 16 11 C 0.14 3.99 5.57 -106.85 -0.60 3.40 16 12 C -0.47 -12.94 9.05 -37.74 -0.34 -13.28 16 13 H 0.07 2.00 7.91 -52.49 -0.41 1.59 16 14 C 0.08 2.04 5.14 -17.35 -0.09 1.95 16 15 N -0.79 -21.28 10.96 55.55 0.61 -20.67 16 16 Si 0.91 19.29 29.60 -169.99 -5.03 14.26 16 17 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C -0.29 -7.58 9.63 -38.67 -0.37 -7.95 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.37 2.82 9.08 45.56 0.41 3.23 16 25 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 26 H 0.05 0.92 7.93 -51.93 -0.41 0.51 16 27 H 0.39 7.20 8.35 -40.82 -0.34 6.86 16 28 H 0.08 1.80 6.70 -52.48 -0.35 1.45 16 29 H 0.08 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.11 3.21 6.15 -52.48 -0.32 2.89 16 31 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 32 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 273.48 15.07 4.12 4.12 Total: -1.00 -30.69 273.48 -7.42 -38.11 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -3.51 Total: 11.65 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -2.82 Total: -24.89 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.28 Total: -35.77 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.46 Total: -7.47 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.69 -7.42 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.108 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds