Wall clock time and date at job start Sun Mar 29 2020 22:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46956 * 2 1 4 4 O 1.42902 * 109.47018 * 119.99595 * 2 1 3 5 5 C 1.52990 * 109.47177 * 239.99674 * 2 1 3 6 6 N 1.46497 * 109.47369 * 180.02562 * 5 2 1 7 7 C 1.39687 * 120.00269 * 179.72215 * 6 5 2 8 8 C 1.39337 * 119.95181 * 0.02562 * 7 6 5 9 9 C 1.38473 * 120.42369 * 179.72060 * 8 7 6 10 10 C 1.37689 * 120.32417 * 0.54913 * 9 8 7 11 11 C 1.40747 * 119.89502 * 359.72729 * 10 9 8 12 12 C 1.41405 * 120.21100 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00416 * 204.45161 * 12 11 10 14 14 C 1.39933 * 119.99724 * 24.44500 * 12 11 10 15 15 N 1.30827 * 120.00318 * 17.89701 * 14 12 11 16 16 Si 1.86804 * 119.99884 * 197.89820 * 14 12 11 17 17 H 1.48502 * 109.47289 * 59.99767 * 16 14 12 18 18 H 1.48499 * 109.47263 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47013 * 300.00174 * 16 14 12 20 20 C 1.38278 * 119.95016 * 180.26986 * 7 6 5 21 21 H 1.08998 * 109.47204 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47095 * 300.00278 * 1 2 3 23 23 H 1.08998 * 109.46423 * 59.99986 * 1 2 3 24 24 H 0.96706 * 114.00242 * 300.00279 * 4 2 1 25 25 H 1.08998 * 109.47512 * 60.00096 * 5 2 1 26 26 H 1.09003 * 109.47443 * 300.00027 * 5 2 1 27 27 H 0.96998 * 119.99579 * 359.97438 * 6 5 2 28 28 H 1.08003 * 119.78478 * 359.97438 * 8 7 6 29 29 H 1.07999 * 119.83588 * 180.27936 * 9 8 7 30 30 H 1.08004 * 120.05310 * 179.74450 * 10 9 8 31 31 H 0.97000 * 120.00268 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.16554 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2491 6 7 3.5050 -0.7218 -1.2488 7 6 4.2035 -1.3319 -2.2935 8 6 3.5058 -1.9392 -3.3355 9 6 4.1883 -2.5418 -4.3789 10 6 5.5650 -2.5572 -4.3921 11 6 6.2834 -1.9528 -3.3434 12 6 7.6974 -1.9643 -3.3505 13 1 8.2428 -1.8765 -2.4225 14 6 8.3899 -2.0895 -4.5600 15 7 7.7796 -1.8472 -5.6915 16 14 10.1861 -2.6026 -4.5590 17 1 10.3182 -3.9412 -3.9296 18 1 10.6852 -2.6606 -5.9564 19 1 10.9831 -1.6134 -3.7898 20 6 5.5862 -1.3367 -2.2893 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.7210 -0.2700 1.9981 25 1 1.6768 -0.2075 -2.1392 26 1 1.6767 -1.7490 -1.2491 27 1 3.9900 -0.3017 -0.5214 28 1 2.4258 -1.9363 -3.3315 29 1 3.6379 -3.0058 -5.1840 30 1 6.0928 -3.0321 -5.2059 31 1 8.2597 -1.9336 -6.5298 32 1 6.1281 -0.8694 -1.4803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:15 Heat of formation + Delta-G solvation = -61.830170 kcal Electronic energy + Delta-G solvation = -14377.192285 eV Core-core repulsion = 11914.876357 eV Total energy + Delta-G solvation = -2462.315929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79535 -38.57072 -36.34302 -34.78850 -32.33164 -31.66428 -29.58265 -27.14307 -26.25498 -23.08666 -22.20793 -21.67298 -19.15001 -18.40443 -17.33767 -17.07659 -16.38608 -16.18095 -15.55960 -14.80095 -14.70248 -14.45252 -14.03046 -13.92913 -13.41929 -13.37226 -12.89758 -12.84601 -12.71643 -12.46512 -12.13039 -11.84699 -11.59379 -11.22239 -11.07319 -10.95352 -10.47091 -9.34710 -8.60664 -7.94116 -6.32822 1.05209 1.34325 1.39583 1.51269 1.61081 2.23449 2.76671 2.81450 3.33281 3.85211 3.93120 4.15689 4.21386 4.49698 4.66088 4.69746 4.73700 4.95671 5.03800 5.12389 5.16317 5.22225 5.28746 5.41432 5.58878 5.93965 6.02356 6.19458 6.30404 6.62287 6.87792 6.92107 7.02109 7.05202 7.24383 8.37764 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058167 B = 0.005635 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.257448 B = 4967.627333 C = 5328.104825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.068 0.932 4 O -0.584 6.584 5 C 0.135 3.865 6 N -0.750 5.750 7 C 0.230 3.770 8 C -0.307 4.307 9 C -0.074 4.074 10 C -0.233 4.233 11 C 0.113 3.887 12 C -0.505 4.505 13 H 0.072 0.928 14 C 0.037 3.963 15 N -0.823 5.823 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.315 4.315 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.394 0.606 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.395 0.605 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.288 0.712 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 3.675 7.862 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.037 3.963 3 H 0.086 0.914 4 O -0.392 6.392 5 C 0.010 3.990 6 N -0.382 5.382 7 C 0.129 3.871 8 C -0.331 4.331 9 C -0.093 4.093 10 C -0.254 4.254 11 C 0.110 3.890 12 C -0.534 4.534 13 H 0.090 0.910 14 C -0.178 4.178 15 N -0.449 5.449 16 Si 0.804 3.196 17 H -0.186 1.186 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.339 4.339 21 H 0.078 0.922 22 H 0.101 0.899 23 H 0.095 0.905 24 H 0.244 0.756 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.229 0.771 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.792 3.299 7.114 12.544 hybrid contribution 0.734 0.305 0.411 0.894 sum -9.058 3.604 7.525 12.314 Atomic orbital electron populations 1.22379 0.93576 1.03191 1.04145 1.21983 0.94623 0.95074 0.84621 0.91385 1.86582 1.77552 1.58219 1.16877 1.21378 0.80518 1.00019 0.97053 1.44404 1.05065 1.64260 1.24484 1.17615 0.90555 0.90990 0.87981 1.20165 0.97944 1.15766 0.99181 1.20734 0.94024 0.97639 0.96878 1.21118 0.93347 1.08581 1.02349 1.17711 0.93714 0.86945 0.90640 1.19786 0.92040 1.47250 0.94346 0.91015 1.26775 1.05406 0.91560 0.94076 1.69910 1.40628 1.34687 0.99638 0.85251 0.75966 0.79811 0.78596 1.18575 1.18926 1.18367 1.20515 0.92139 1.16220 1.05046 0.92176 0.89881 0.90495 0.75585 0.91228 0.93637 0.77067 0.87014 0.87177 0.88391 0.90184 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.54 71.98 0.69 -1.92 16 2 C 0.10 2.02 3.67 30.59 0.11 2.13 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 O -0.58 -13.23 13.06 -148.98 -1.95 -15.17 16 5 C 0.13 3.98 4.60 86.38 0.40 4.38 16 6 N -0.75 -28.36 5.62 -339.60 -1.91 -30.27 16 7 C 0.23 10.94 6.64 38.16 0.25 11.20 16 8 C -0.31 -14.41 9.32 22.59 0.21 -14.20 16 9 C -0.07 -3.69 10.01 22.20 0.22 -3.47 16 10 C -0.23 -13.21 8.70 22.75 0.20 -13.01 16 11 C 0.11 6.58 5.57 -21.31 -0.12 6.47 16 12 C -0.50 -29.02 9.05 23.46 0.21 -28.81 16 13 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 14 C 0.04 1.95 5.14 85.25 0.44 2.39 16 15 N -0.82 -45.07 10.96 21.82 0.24 -44.83 16 16 Si 0.98 39.82 29.60 68.60 2.03 41.85 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 18 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 C -0.31 -16.89 9.63 22.86 0.22 -16.67 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.39 4.86 9.08 -74.05 -0.67 4.19 16 25 H 0.07 1.96 7.95 -2.39 -0.02 1.94 16 26 H 0.05 1.45 7.93 -2.39 -0.02 1.43 16 27 H 0.40 14.17 8.35 -92.71 -0.77 13.39 16 28 H 0.11 4.54 6.70 -2.91 -0.02 4.52 16 29 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 30 H 0.10 5.75 6.15 -2.91 -0.02 5.73 16 31 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 32 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -67.27 273.48 0.93 -66.34 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.32 Total: 33.60 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 2.83 Total: -51.52 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.67 Total: -75.10 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.95 Total: -15.17 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -67.27 0.93 -66.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.511 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds