Wall clock time and date at job start Sun Mar 29 2020 22:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47231 * 2 1 4 4 O 1.42895 * 109.47010 * 240.00008 * 2 1 3 5 5 C 1.52996 * 109.47534 * 119.99819 * 2 1 3 6 6 N 1.46493 * 109.47446 * 184.99818 * 5 2 1 7 7 C 1.39695 * 120.00144 * 179.97438 * 6 5 2 8 8 C 1.39339 * 119.94803 * 359.73230 * 7 6 5 9 9 C 1.38476 * 120.41753 * 179.71860 * 8 7 6 10 10 C 1.37688 * 120.32846 * 0.55277 * 9 8 7 11 11 C 1.40755 * 119.88957 * 359.72404 * 10 9 8 12 12 C 1.41408 * 120.20559 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00552 * 150.19132 * 12 11 10 14 14 C 1.39938 * 120.00129 * 330.19539 * 12 11 10 15 15 N 1.30821 * 119.99997 * 161.72818 * 14 12 11 16 16 Si 1.86806 * 119.99773 * 341.72670 * 14 12 11 17 17 H 1.48502 * 109.46902 * 95.41177 * 16 14 12 18 18 H 1.48496 * 109.47034 * 215.41144 * 16 14 12 19 19 H 1.48502 * 109.46933 * 335.41665 * 16 14 12 20 20 C 1.38276 * 119.95152 * 180.02562 * 7 6 5 21 21 H 1.09002 * 109.46717 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46689 * 299.99752 * 1 2 3 23 23 H 1.08998 * 109.47297 * 59.99694 * 1 2 3 24 24 H 0.96700 * 114.00384 * 299.99801 * 4 2 1 25 25 H 1.09009 * 109.47177 * 305.00110 * 5 2 1 26 26 H 1.09000 * 109.46844 * 64.99789 * 5 2 1 27 27 H 0.97002 * 120.00018 * 0.02562 * 6 5 2 28 28 H 1.07999 * 119.78908 * 359.97438 * 8 7 6 29 29 H 1.08008 * 119.83345 * 180.27458 * 9 8 7 30 30 H 1.08000 * 120.05343 * 179.74644 * 10 9 8 31 31 H 0.97009 * 120.00114 * 180.02562 * 15 14 12 32 32 H 1.08005 * 120.15976 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0401 -0.7212 1.2492 6 7 3.5001 -0.6178 1.3109 7 6 4.1976 -1.2031 2.3702 8 6 3.5032 -1.8802 3.3707 9 6 4.1853 -2.4690 4.4222 10 6 5.5574 -2.3819 4.4965 11 6 6.2719 -1.6962 3.4962 12 6 7.6812 -1.6031 3.5656 13 1 8.2634 -1.5356 2.6584 14 6 8.3218 -1.5985 4.8098 15 7 9.5989 -1.8709 4.8890 16 14 7.3531 -1.2034 6.3574 17 1 6.9076 -2.4667 6.9985 18 1 8.2147 -0.4467 7.3009 19 1 6.1671 -0.3830 6.0031 20 6 5.5757 -1.1045 2.4277 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.7210 -1.5952 -1.2329 25 1 1.6055 -0.2616 2.1370 26 1 1.7517 -1.7714 1.2056 27 1 3.9824 -0.1423 0.6164 28 1 2.4265 -1.9497 3.3235 29 1 3.6379 -2.9953 5.1902 30 1 6.0846 -2.8392 5.3207 31 1 10.0428 -1.8680 5.7515 32 1 6.1146 -0.5762 1.6550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:22 Heat of formation + Delta-G solvation = -63.684273 kcal Electronic energy + Delta-G solvation = -14471.330842 eV Core-core repulsion = 12008.934513 eV Total energy + Delta-G solvation = -2462.396328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99926 -38.72109 -36.27296 -34.94533 -32.33590 -32.04651 -29.94165 -27.01953 -26.31022 -23.15501 -22.57397 -21.84495 -19.29479 -17.83287 -17.68330 -16.90264 -16.61659 -16.35586 -15.95405 -14.97191 -14.79522 -14.45893 -14.33653 -14.09164 -13.68871 -13.31251 -13.17635 -12.82607 -12.67818 -12.56264 -12.22255 -11.80913 -11.59376 -11.36596 -11.12819 -10.97832 -10.56692 -9.47872 -8.87053 -8.07674 -6.49970 0.86180 1.09904 1.29804 1.44675 1.53652 2.17823 2.65522 2.69654 3.51913 3.62105 3.79921 4.13518 4.24571 4.37566 4.59501 4.65072 4.71214 4.74149 4.88258 4.99986 5.09463 5.16633 5.18014 5.28733 5.54759 5.77162 5.87206 5.99366 6.10784 6.38916 6.70545 6.78791 6.83492 6.91465 7.08531 8.22105 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054768 B = 0.006220 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.123857 B = 4500.507529 C = 4789.043054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 H 0.097 0.903 4 O -0.579 6.579 5 C 0.099 3.901 6 N -0.749 5.749 7 C 0.241 3.759 8 C -0.291 4.291 9 C -0.047 4.047 10 C -0.294 4.294 11 C 0.107 3.893 12 C -0.492 4.492 13 H 0.050 0.950 14 C 0.049 3.951 15 N -0.855 5.855 16 Si 0.973 3.027 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.255 1.255 20 C -0.300 4.300 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.388 0.612 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.396 0.604 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.293 0.707 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.663 2.396 -4.172 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.038 3.962 3 H 0.115 0.885 4 O -0.386 6.386 5 C -0.026 4.026 6 N -0.380 5.380 7 C 0.138 3.862 8 C -0.313 4.313 9 C -0.066 4.066 10 C -0.315 4.315 11 C 0.103 3.897 12 C -0.521 4.521 13 H 0.068 0.932 14 C -0.165 4.165 15 N -0.481 5.481 16 Si 0.797 3.203 17 H -0.183 1.183 18 H -0.206 1.206 19 H -0.179 1.179 20 C -0.324 4.324 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.237 0.763 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.231 0.769 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.342 2.902 -4.170 18.071 hybrid contribution 0.532 -0.289 0.337 0.693 sum -16.810 2.613 -3.833 17.438 Atomic orbital electron populations 1.22354 0.93427 1.03764 1.03638 1.22113 0.94778 0.96313 0.83002 0.88539 1.86564 1.77906 1.30321 1.43843 1.22119 0.80443 1.00803 0.99216 1.44549 1.05931 1.61788 1.25761 1.17669 0.90273 0.90521 0.87724 1.20343 0.98857 1.12963 0.99177 1.20780 0.93146 0.95869 0.96795 1.20967 0.95233 1.11628 1.03653 1.17601 0.92507 0.88005 0.91540 1.19459 0.91532 1.47190 0.93966 0.93182 1.26830 0.95754 0.90487 1.03455 1.69736 1.12648 1.36399 1.29357 0.85386 0.78694 0.79805 0.76461 1.18314 1.20592 1.17925 1.20515 0.92473 1.14411 1.04995 0.90986 0.90407 0.91114 0.76268 0.91482 0.91972 0.76941 0.85545 0.85424 0.88965 0.89693 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.53 71.98 0.69 -1.47 16 2 C 0.10 1.77 3.62 30.59 0.11 1.88 16 3 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 4 O -0.58 -11.99 13.28 -148.98 -1.98 -13.97 16 5 C 0.10 2.25 4.54 86.38 0.39 2.65 16 6 N -0.75 -23.98 5.68 -339.58 -1.93 -25.91 16 7 C 0.24 9.94 6.64 38.16 0.25 10.19 16 8 C -0.29 -11.33 9.32 22.59 0.21 -11.12 16 9 C -0.05 -1.98 10.01 22.20 0.22 -1.76 16 10 C -0.29 -14.57 7.17 22.76 0.16 -14.41 16 11 C 0.11 5.78 5.10 -21.31 -0.11 5.67 16 12 C -0.49 -29.26 9.57 23.46 0.22 -29.03 16 13 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 14 C 0.05 2.73 5.40 85.26 0.46 3.19 16 15 N -0.85 -48.90 13.93 21.82 0.30 -48.59 16 16 Si 0.97 45.04 24.52 68.60 1.68 46.72 16 17 H -0.26 -11.23 6.71 99.48 0.67 -10.56 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.26 -12.14 6.86 99.48 0.68 -11.45 16 20 C -0.30 -14.76 9.63 22.85 0.22 -14.54 16 21 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.39 5.58 9.05 -74.06 -0.67 4.91 16 25 H 0.07 1.48 7.93 -2.38 -0.02 1.46 16 26 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 27 H 0.40 12.49 8.48 -92.71 -0.79 11.70 16 28 H 0.13 4.03 6.70 -2.91 -0.02 4.01 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.09 4.57 4.73 -2.91 -0.01 4.56 16 31 H 0.29 14.99 8.30 -92.70 -0.77 14.22 16 32 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -66.01 268.52 0.53 -65.49 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.39 Total: 25.01 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 2.84 Total: -48.75 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.62 Total: -74.50 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.98 Total: -13.97 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.68 Total: 46.72 kcal Total: -66.01 0.53 -65.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.803 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds