Wall clock time and date at job start Sun Mar 29 2020 22:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47014 * 2 1 4 4 C 1.38632 * 120.39976 * 125.00770 * 3 2 1 5 5 C 1.38577 * 118.55960 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.40162 * 180.02562 * 5 4 3 7 7 N 1.32295 * 119.19580 * 359.97438 * 5 4 3 8 8 C 1.32471 * 120.74519 * 0.02562 * 7 5 4 9 9 N 1.38409 * 119.22014 * 179.97438 * 8 7 5 10 10 C 1.46493 * 119.99630 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.47128 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72498 * 11 10 9 14 14 N 1.31514 * 120.00481 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00365 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00213 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00116 * 15 13 11 19 19 N 1.32263 * 120.40418 * 305.30201 * 3 2 1 20 20 H 1.09007 * 109.46554 * 299.99623 * 1 2 3 21 21 H 1.08995 * 109.47828 * 59.99224 * 1 2 3 22 22 H 1.09004 * 109.47114 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46901 * 240.00713 * 2 1 3 24 24 H 1.08995 * 109.47828 * 120.00776 * 2 1 3 25 25 H 1.07998 * 120.71887 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.47118 * 269.97407 * 6 5 4 27 27 H 1.09004 * 109.46914 * 29.97225 * 6 5 4 28 28 H 1.09000 * 109.47429 * 149.97534 * 6 5 4 29 29 H 0.97005 * 119.99840 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.47786 * 59.99821 * 10 9 8 31 31 H 1.08998 * 109.47558 * 299.99684 * 10 9 8 32 32 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9129 1.8536 0.9794 5 6 3.3500 3.1681 0.9433 6 6 4.3079 3.6822 1.9870 7 7 2.9171 3.9659 -0.0192 8 6 2.0755 3.5210 -0.9404 9 7 1.6424 4.3832 -1.9327 10 6 2.1152 5.7695 -1.9561 11 6 1.4997 6.4905 -3.1277 12 1 0.8243 5.9680 -3.7889 13 6 1.7948 7.8184 -3.3524 14 7 1.2573 8.4477 -4.3745 15 14 2.9570 8.7241 -2.2042 16 1 4.3498 8.5876 -2.7009 17 1 2.5867 10.1615 -2.1579 18 1 2.8585 8.1434 -0.8410 19 7 1.6339 2.2717 -0.9310 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8898 25 1 3.2502 1.1811 1.7542 26 1 3.7454 4.0867 2.8285 27 1 4.9415 2.8653 2.3324 28 1 4.9294 4.4665 1.5549 29 1 1.0264 4.0692 -2.6131 30 1 3.2009 5.7817 -2.0521 31 1 1.8268 6.2675 -1.0304 32 1 1.4647 9.3820 -4.5324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306276186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:40 Heat of formation + Delta-G solvation = 16.069343 kcal Electronic energy + Delta-G solvation = -14471.820714 eV Core-core repulsion = 12045.175513 eV Total energy + Delta-G solvation = -2426.645201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.89394 -37.45328 -36.06291 -34.93088 -33.44806 -31.57235 -29.83591 -28.88090 -25.36902 -24.42018 -23.33580 -21.68525 -19.54082 -18.45807 -17.62731 -16.64635 -16.45457 -16.27440 -15.32134 -15.25551 -14.93369 -14.69413 -14.42047 -14.18314 -13.80363 -13.28138 -13.01911 -12.98848 -12.69785 -12.38540 -12.07720 -11.90570 -11.74953 -11.63104 -11.18227 -11.11577 -10.81673 -9.95673 -8.89674 -8.41635 -6.50130 0.32036 0.35399 1.33600 1.34375 1.48723 2.11730 2.28314 2.91523 2.98273 3.25669 3.54961 3.86251 4.29304 4.35477 4.43459 4.48252 4.60148 4.75151 4.77798 4.85164 4.92167 5.03792 5.04985 5.15225 5.18967 5.25121 5.41624 5.56591 5.84968 6.19493 6.29037 6.52319 6.78233 7.14038 7.53732 8.73870 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034576 B = 0.007082 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.626059 B = 3952.672782 C = 4683.853922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C 0.202 3.798 4 C -0.294 4.294 5 C 0.196 3.804 6 C -0.099 4.099 7 N -0.608 5.608 8 C 0.550 3.450 9 N -0.686 5.686 10 C 0.261 3.739 11 C -0.555 4.555 12 H 0.047 0.953 13 C 0.024 3.976 14 N -0.934 5.934 15 Si 0.947 3.053 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.253 1.253 19 N -0.598 5.598 20 H 0.046 0.954 21 H 0.040 0.960 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.117 0.883 25 H 0.180 0.820 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.409 0.591 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -15.605 14.884 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C 0.054 3.946 4 C -0.319 4.319 5 C 0.049 3.951 6 C -0.156 4.156 7 N -0.335 5.335 8 C 0.193 3.807 9 N -0.320 5.320 10 C 0.137 3.863 11 C -0.593 4.593 12 H 0.066 0.934 13 C -0.176 4.176 14 N -0.573 5.573 15 Si 0.769 3.231 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.177 1.177 19 N -0.324 5.324 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.108 0.892 24 H 0.135 0.865 25 H 0.197 0.803 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.087 0.913 29 H 0.245 0.755 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.742 -14.573 14.051 20.792 hybrid contribution 0.111 0.325 -0.015 0.344 sum 4.853 -14.248 14.036 20.581 Atomic orbital electron populations 1.21627 0.94076 1.02759 1.01327 1.20661 0.96926 0.87716 1.05149 1.22151 0.88909 0.96319 0.87181 1.22498 1.06273 0.98092 1.05084 1.22210 0.91607 0.90207 0.91093 1.20866 0.96771 1.03057 0.94935 1.67834 1.17985 1.40362 1.07281 1.19591 0.87435 0.86171 0.87494 1.44468 1.49428 1.10428 1.27706 1.18967 0.94012 0.77702 0.95581 1.21322 1.29363 0.96905 1.11717 0.93431 1.25683 0.97321 0.97837 0.96737 1.70002 1.45123 1.11934 1.30243 0.85718 0.79266 0.77958 0.80111 1.18744 1.19761 1.17681 1.67709 1.31486 1.02787 1.30392 0.93440 0.94121 0.89665 0.89183 0.86491 0.80264 0.88664 0.86858 0.91334 0.75497 0.96851 0.96710 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.78 71.98 0.70 -2.04 16 2 C -0.07 -1.26 6.37 29.85 0.19 -1.07 16 3 C 0.20 5.77 6.21 42.59 0.26 6.03 16 4 C -0.29 -7.32 9.48 22.44 0.21 -7.11 16 5 C 0.20 5.91 6.82 42.57 0.29 6.20 16 6 C -0.10 -2.01 10.22 71.24 0.73 -1.28 16 7 N -0.61 -24.77 9.52 -186.05 -1.77 -26.54 16 8 C 0.55 23.71 8.43 261.49 2.20 25.91 16 9 N -0.69 -32.41 5.70 -354.79 -2.02 -34.43 16 10 C 0.26 13.56 4.47 85.64 0.38 13.94 16 11 C -0.56 -32.66 9.83 25.60 0.25 -32.41 16 12 H 0.05 3.02 7.84 -2.91 -0.02 2.99 16 13 C 0.02 1.42 5.47 84.65 0.46 1.88 16 14 N -0.93 -57.77 13.96 21.45 0.30 -57.47 16 15 Si 0.95 44.64 27.47 68.60 1.88 46.53 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.25 -11.58 6.53 99.48 0.65 -10.93 16 19 N -0.60 -22.55 10.05 -186.02 -1.87 -24.42 16 20 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 21 H 0.04 1.01 7.97 -2.39 -0.02 1.00 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.12 1.35 7.94 -2.39 -0.02 1.33 16 25 H 0.18 2.70 8.01 -2.91 -0.02 2.68 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.11 1.44 8.09 -2.38 -0.02 1.42 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.41 18.86 8.44 -92.70 -0.78 18.07 16 30 H 0.01 0.72 7.58 -2.39 -0.02 0.70 16 31 H 0.02 0.80 7.18 -2.39 -0.02 0.78 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -71.72 276.58 2.49 -69.23 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.28 Total: 17.04 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.69 Total: 10.06 kcal Atomic # 7 Polarization: -137.50 SS G_CDS: -5.36 Total: -142.86 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -71.72 2.49 -69.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306276186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.301 kcal (2) G-P(sol) polarization free energy of solvation -71.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds