Wall clock time and date at job start Sun Mar 29 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38605 * 120.39830 * 2 1 4 4 C 1.38607 * 118.56025 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.40091 * 180.02562 * 4 3 2 6 6 N 1.32280 * 119.19191 * 359.97438 * 4 3 2 7 7 C 1.32493 * 120.74235 * 0.02562 * 6 4 3 8 8 N 1.38403 * 119.21328 * 179.97438 * 7 6 4 9 9 C 1.46500 * 119.99726 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47099 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47176 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00330 * 180.02562 * 11 10 9 14 14 N 1.31524 * 119.99346 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00399 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46960 * 59.99889 * 15 13 11 17 17 H 1.48498 * 109.47158 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47116 * 300.00307 * 15 13 11 19 19 N 1.32272 * 120.40405 * 179.71725 * 2 1 3 20 20 H 1.08999 * 109.47015 * 90.00477 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99630 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00347 * 1 2 3 23 23 H 1.08006 * 120.72045 * 359.95300 * 3 2 1 24 24 H 1.08993 * 109.47306 * 90.00110 * 5 4 3 25 25 H 1.09008 * 109.46669 * 209.99510 * 5 4 3 26 26 H 1.08999 * 109.47490 * 329.99396 * 5 4 3 27 27 H 0.96995 * 120.00584 * 0.02562 * 8 7 6 28 28 H 1.09000 * 109.47613 * 300.00377 * 9 8 7 29 29 H 1.09007 * 109.47283 * 60.00569 * 9 8 7 30 30 H 1.09002 * 109.47268 * 299.99686 * 10 9 8 31 31 H 1.08999 * 109.47168 * 60.00181 * 10 9 8 32 32 H 0.97005 * 119.99149 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5938 1.1510 0.0005 5 6 4.3976 2.4257 0.0011 6 7 4.2016 -0.0238 0.0016 7 6 3.5014 -1.1486 0.0015 8 7 4.1699 -2.3605 0.0021 9 6 3.4127 -3.6147 0.0027 10 6 4.3841 -4.7968 0.0025 11 6 3.6052 -6.0870 0.0025 12 1 2.5254 -6.0659 0.0029 13 6 4.2710 -7.2943 0.0029 14 7 5.5860 -7.3199 0.0028 15 14 3.3057 -8.8934 0.0036 16 1 2.4505 -8.9558 -1.2089 17 1 4.2484 -10.0408 0.0033 18 1 2.4506 -8.9549 1.2160 19 7 2.1765 -1.1408 0.0056 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6867 2.1412 -0.0008 24 1 4.5911 2.7328 1.0289 25 1 5.3445 2.2582 -0.5123 26 1 3.8390 3.2079 -0.5128 27 1 5.1396 -2.3795 0.0028 28 1 2.7850 -3.6598 0.8926 29 1 2.7851 -3.6606 -0.8874 30 1 5.0114 -4.7516 -0.8877 31 1 5.0120 -4.7512 0.8923 32 1 6.0545 -8.1693 0.0028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306470410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:43 Heat of formation + Delta-G solvation = 32.451467 kcal Electronic energy + Delta-G solvation = -14185.545750 eV Core-core repulsion = 11759.610931 eV Total energy + Delta-G solvation = -2425.934819 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68215 -36.12523 -34.49831 -33.33940 -31.80825 -29.27329 -29.03757 -27.24877 -24.75931 -22.27665 -21.83299 -20.49706 -17.42233 -17.00331 -15.98635 -15.26985 -15.24237 -14.55150 -13.93259 -13.81429 -13.58975 -13.42850 -12.89716 -12.56019 -12.54061 -12.22871 -12.04376 -11.20504 -11.06368 -10.64237 -10.60551 -10.52803 -10.04106 -9.59204 -9.58796 -9.30194 -8.78284 -8.41838 -7.57363 -6.07129 -4.10268 1.42507 1.50513 3.32103 3.34504 3.36540 3.43032 4.15130 4.31840 4.42513 4.57820 5.00956 5.29671 5.33116 5.36525 5.41549 5.48043 5.57239 5.64079 5.80418 5.99170 6.01494 6.32588 6.39036 6.62001 6.78186 7.22773 7.50874 7.60371 7.64978 7.91031 7.99969 8.29447 8.77806 8.95533 9.54152 11.04582 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046401 B = 0.005264 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.289957 B = 5317.761932 C = 5890.001474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.218 3.782 3 C -0.311 4.311 4 C 0.216 3.784 5 C -0.103 4.103 6 N -0.585 5.585 7 C 0.573 3.427 8 N -0.686 5.686 9 C 0.139 3.861 10 C 0.011 3.989 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.570 5.570 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.135 0.865 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.411 0.589 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 17.326 -0.013 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 C -0.338 4.338 4 C 0.067 3.933 5 C -0.160 4.160 6 N -0.310 5.310 7 C 0.216 3.784 8 N -0.320 5.320 9 C 0.016 3.984 10 C -0.026 4.026 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 N -0.295 5.295 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.153 0.847 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.248 0.752 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.768 16.066 -0.006 17.070 hybrid contribution -0.440 -0.186 -0.003 0.477 sum -6.208 15.881 -0.009 17.051 Atomic orbital electron populations 1.20744 0.88465 1.03616 1.03326 1.21381 0.96840 0.87606 0.87277 1.22013 0.95363 0.99758 1.16669 1.21303 0.91353 0.92952 0.87661 1.20728 1.00054 0.92004 1.03244 1.67751 1.41027 0.97715 1.24490 1.19456 0.85230 0.86556 0.87152 1.44823 1.09276 1.01871 1.75997 1.21718 0.95274 0.80693 1.00712 1.19342 0.94521 0.90830 0.97942 1.20981 0.93153 0.90281 1.51529 0.92261 1.25002 0.94914 0.99372 0.95005 1.69962 1.06744 1.26330 1.50222 0.86559 0.79645 0.82500 0.78739 1.20118 1.21244 1.20114 1.67824 1.07743 1.30421 1.23546 0.89980 0.90070 0.90488 0.84721 0.90053 0.90271 0.90454 0.75196 0.92598 0.92606 0.95915 0.95917 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.22 36.01 0.37 -0.73 16 2 C 0.22 3.22 6.82 -82.26 -0.56 2.66 16 3 C -0.31 -4.06 9.53 -39.31 -0.37 -4.43 16 4 C 0.22 3.07 6.82 -82.27 -0.56 2.51 16 5 C -0.10 -0.99 10.22 36.00 0.37 -0.62 16 6 N -0.58 -10.33 10.40 -10.16 -0.11 -10.43 16 7 C 0.57 11.08 8.42 -322.82 -2.72 8.36 16 8 N -0.69 -13.71 5.70 -62.31 -0.36 -14.06 16 9 C 0.14 3.05 5.59 -4.04 -0.02 3.03 16 10 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 11 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 15 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 N -0.57 -10.59 9.52 -10.15 -0.10 -10.69 16 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 23 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 26 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.41 7.80 8.59 -40.82 -0.35 7.45 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -31.76 281.06 -9.20 -40.96 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.54 Total: 1.75 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -4.06 Total: -2.43 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.18 Total: -61.04 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.76 -9.20 -40.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.416 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds