Wall clock time and date at job start Sun Mar 29 2020 22:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38605 * 120.39830 * 2 1 4 4 C 1.38607 * 118.56025 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.40091 * 180.02562 * 4 3 2 6 6 N 1.32280 * 119.19191 * 359.97438 * 4 3 2 7 7 C 1.32493 * 120.74235 * 0.02562 * 6 4 3 8 8 N 1.38403 * 119.21328 * 179.97438 * 7 6 4 9 9 C 1.46500 * 119.99726 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47099 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47176 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00330 * 180.02562 * 11 10 9 14 14 N 1.31524 * 119.99346 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00399 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46960 * 59.99889 * 15 13 11 17 17 H 1.48498 * 109.47158 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47116 * 300.00307 * 15 13 11 19 19 N 1.32272 * 120.40405 * 179.71725 * 2 1 3 20 20 H 1.08999 * 109.47015 * 90.00477 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99630 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00347 * 1 2 3 23 23 H 1.08006 * 120.72045 * 359.95300 * 3 2 1 24 24 H 1.08993 * 109.47306 * 90.00110 * 5 4 3 25 25 H 1.09008 * 109.46669 * 209.99510 * 5 4 3 26 26 H 1.08999 * 109.47490 * 329.99396 * 5 4 3 27 27 H 0.96995 * 120.00584 * 0.02562 * 8 7 6 28 28 H 1.09000 * 109.47613 * 300.00377 * 9 8 7 29 29 H 1.09007 * 109.47283 * 60.00569 * 9 8 7 30 30 H 1.09002 * 109.47268 * 299.99686 * 10 9 8 31 31 H 1.08999 * 109.47168 * 60.00181 * 10 9 8 32 32 H 0.97005 * 119.99149 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5938 1.1510 0.0005 5 6 4.3976 2.4257 0.0011 6 7 4.2016 -0.0238 0.0016 7 6 3.5014 -1.1486 0.0015 8 7 4.1699 -2.3605 0.0021 9 6 3.4127 -3.6147 0.0027 10 6 4.3841 -4.7968 0.0025 11 6 3.6052 -6.0870 0.0025 12 1 2.5254 -6.0659 0.0029 13 6 4.2710 -7.2943 0.0029 14 7 5.5860 -7.3199 0.0028 15 14 3.3057 -8.8934 0.0036 16 1 2.4505 -8.9558 -1.2089 17 1 4.2484 -10.0408 0.0033 18 1 2.4506 -8.9549 1.2160 19 7 2.1765 -1.1408 0.0056 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6867 2.1412 -0.0008 24 1 4.5911 2.7328 1.0289 25 1 5.3445 2.2582 -0.5123 26 1 3.8390 3.2079 -0.5128 27 1 5.1396 -2.3795 0.0028 28 1 2.7850 -3.6598 0.8926 29 1 2.7851 -3.6606 -0.8874 30 1 5.0114 -4.7516 -0.8877 31 1 5.0120 -4.7512 0.8923 32 1 6.0545 -8.1693 0.0028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306470410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:42 Heat of formation + Delta-G solvation = 13.159935 kcal Electronic energy + Delta-G solvation = -14186.382294 eV Core-core repulsion = 11759.610931 eV Total energy + Delta-G solvation = -2426.771362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.90216 -37.68291 -35.61519 -35.26816 -33.34560 -30.90056 -30.20828 -28.17885 -26.69954 -23.69438 -23.32568 -21.98576 -18.84991 -18.62736 -17.74952 -16.59584 -16.51419 -16.29275 -15.56902 -15.44011 -14.73511 -14.24650 -14.22597 -13.86387 -13.69556 -13.27891 -13.25231 -12.91482 -12.87475 -12.52059 -12.31846 -11.81475 -11.61016 -11.41811 -11.22468 -11.00139 -10.58148 -10.03039 -8.97696 -8.24742 -6.36432 0.28141 0.30915 1.41226 1.44719 1.52616 1.98067 2.41979 2.92844 3.09848 3.22703 3.59865 3.82206 4.32713 4.43642 4.48862 4.49972 4.56963 4.75631 4.79670 4.80876 4.83826 4.96865 5.02374 5.23979 5.33303 5.54471 5.56112 5.73063 5.93375 6.11699 6.26627 6.61289 6.77170 7.33080 7.46288 8.87595 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046401 B = 0.005264 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.289957 B = 5317.761932 C = 5890.001474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.197 3.803 3 C -0.293 4.293 4 C 0.198 3.802 5 C -0.098 4.098 6 N -0.606 5.606 7 C 0.552 3.448 8 N -0.699 5.699 9 C 0.169 3.831 10 C 0.021 3.979 11 C -0.545 4.545 12 H 0.064 0.936 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.971 3.029 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.266 1.266 19 N -0.603 5.603 20 H 0.096 0.904 21 H 0.069 0.931 22 H 0.111 0.889 23 H 0.180 0.820 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.411 0.589 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 19.066 -0.017 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 C -0.319 4.319 4 C 0.051 3.949 5 C -0.155 4.155 6 N -0.332 5.332 7 C 0.194 3.806 8 N -0.334 5.334 9 C 0.045 3.955 10 C -0.017 4.017 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.795 3.205 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.191 1.191 19 N -0.329 5.329 20 H 0.114 0.886 21 H 0.088 0.912 22 H 0.130 0.870 23 H 0.198 0.802 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.128 0.872 27 H 0.248 0.752 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.611 17.886 -0.010 19.438 hybrid contribution 0.099 -0.532 -0.001 0.541 sum -7.512 17.354 -0.011 18.910 Atomic orbital electron populations 1.20869 0.85487 1.04794 1.04520 1.22214 0.98837 0.87325 0.86610 1.22526 0.94974 1.00952 1.13416 1.22206 0.92823 0.93226 0.86617 1.20865 0.99652 0.90398 1.04588 1.67778 1.41732 0.98388 1.25266 1.19545 0.85862 0.86611 0.88534 1.44516 1.09048 1.01808 1.78022 1.21116 0.93934 0.80645 0.99827 1.19151 0.94530 0.92132 0.95849 1.21404 0.93688 0.91508 1.51687 0.91786 1.25961 0.95923 1.03272 0.94277 1.70092 1.08490 1.27440 1.50960 0.85414 0.78240 0.77608 0.79281 1.19090 1.20680 1.19083 1.67830 1.07579 1.32790 1.24747 0.88591 0.91171 0.87018 0.80224 0.88513 0.90804 0.87151 0.75240 0.93397 0.93399 0.97957 0.97961 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 10.22 71.24 0.73 -1.09 16 2 C 0.20 5.45 6.82 42.58 0.29 5.74 16 3 C -0.29 -6.68 9.53 22.45 0.21 -6.47 16 4 C 0.20 5.22 6.82 42.58 0.29 5.51 16 5 C -0.10 -1.57 10.22 71.23 0.73 -0.85 16 6 N -0.61 -21.34 10.40 -186.05 -1.93 -23.27 16 7 C 0.55 21.76 8.42 261.49 2.20 23.96 16 8 N -0.70 -29.23 5.70 -351.03 -2.00 -31.23 16 9 C 0.17 7.76 5.59 86.38 0.48 8.24 16 10 C 0.02 1.13 5.09 29.85 0.15 1.28 16 11 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 12 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.00 0.24 5.46 84.65 0.46 0.70 16 14 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 15 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 N -0.60 -22.47 9.52 -186.04 -1.77 -24.24 16 20 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.11 1.25 8.09 -2.39 -0.02 1.23 16 23 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 24 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.11 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.41 16.60 8.59 -92.71 -0.80 15.80 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -70.63 281.06 2.70 -67.93 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.31 Total: 14.72 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.78 Total: 5.99 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -5.42 Total: -134.93 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -70.63 2.70 -67.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.087 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds