Wall clock time and date at job start Sun Mar 29 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47037 * 2 1 4 4 H 1.08998 * 109.46976 * 305.66016 * 3 2 1 5 5 C 1.50707 * 109.47011 * 185.66181 * 3 2 1 6 6 H 1.08002 * 119.99955 * 275.00837 * 5 3 2 7 7 C 1.37874 * 120.00000 * 95.00032 * 5 3 2 8 8 N 1.31516 * 119.99966 * 184.83509 * 7 5 3 9 9 Si 1.86802 * 120.00222 * 4.83270 * 7 5 3 10 10 H 1.48500 * 109.47165 * 84.85580 * 9 7 5 11 11 H 1.48497 * 109.47533 * 204.86228 * 9 7 5 12 12 H 1.48503 * 109.46805 * 324.86311 * 9 7 5 13 13 N 1.46498 * 109.47327 * 65.66348 * 3 2 1 14 14 C 1.38411 * 119.99817 * 274.99547 * 13 3 2 15 15 N 1.32492 * 119.21636 * 359.73185 * 14 13 3 16 16 C 1.32277 * 120.73964 * 179.71510 * 15 14 13 17 17 C 1.38604 * 119.19298 * 0.54762 * 16 15 14 18 18 C 1.50702 * 120.71882 * 179.74993 * 17 16 15 19 19 C 1.38600 * 118.56242 * 359.73056 * 17 16 15 20 20 N 1.32273 * 119.19737 * 359.97438 * 19 17 16 21 21 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46845 * 300.00582 * 1 2 3 23 23 H 1.09000 * 109.47074 * 60.00057 * 1 2 3 24 24 H 1.08997 * 109.46845 * 239.99418 * 2 1 3 25 25 H 1.09000 * 109.46613 * 119.99676 * 2 1 3 26 26 H 0.97001 * 120.00028 * 180.02562 * 8 7 5 27 27 H 0.96998 * 120.00503 * 95.00263 * 13 3 2 28 28 H 1.08000 * 120.40190 * 180.25529 * 16 15 14 29 29 H 1.08999 * 109.47523 * 269.98081 * 18 17 16 30 30 H 1.09005 * 109.46958 * 29.97843 * 18 17 16 31 31 H 1.08998 * 109.46998 * 149.97676 * 18 17 16 32 32 H 1.08000 * 120.40451 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5406 1.4448 -0.1402 6 1 4.1648 1.3334 0.7341 7 6 4.1165 1.5890 -1.3846 8 7 5.4213 1.4959 -1.5200 9 14 3.0434 1.9164 -2.8782 10 1 2.7770 3.3733 -2.9864 11 1 3.7423 1.4487 -4.1020 12 1 1.7577 1.1876 -2.7332 13 7 1.6662 2.0926 1.2585 14 6 0.4175 2.6744 1.3925 15 7 -0.4255 2.6390 0.3710 16 6 -1.6285 3.1805 0.4680 17 6 -1.9977 3.7996 1.6518 18 6 -3.3575 4.4326 1.7980 19 6 -1.0894 3.8235 2.6985 20 7 0.0954 3.2579 2.5377 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.8265 1.5977 -2.3954 27 1 2.2937 2.1155 1.9977 28 1 -2.3128 3.1449 -0.3668 29 1 -3.3083 5.4757 1.4855 30 1 -4.0752 3.9000 1.1740 31 1 -3.6727 4.3799 2.8401 32 1 -1.3459 4.2983 3.6340 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306530073.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:43 Heat of formation + Delta-G solvation = 47.397426 kcal Electronic energy + Delta-G solvation = -15047.456223 eV Core-core repulsion = 12622.169510 eV Total energy + Delta-G solvation = -2425.286713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49847 -36.54813 -33.50762 -33.08821 -32.10268 -30.94143 -27.80969 -25.78121 -24.25143 -22.77772 -21.83439 -19.85475 -18.10400 -16.96574 -16.46649 -15.15929 -14.72051 -14.36547 -13.98574 -13.68356 -13.35017 -13.11359 -12.77841 -12.55972 -12.27099 -11.91816 -11.87887 -10.98726 -10.86210 -10.75665 -10.48513 -10.21074 -9.98046 -9.87083 -9.45933 -9.19671 -8.68723 -8.50853 -7.17139 -6.24371 -4.28135 1.64550 1.66842 3.24367 3.32432 3.38519 3.72595 4.30894 4.39265 4.70044 4.97050 5.11041 5.17233 5.25686 5.45777 5.66731 5.87225 5.95862 6.04200 6.06382 6.21389 6.27905 6.60698 6.73602 6.76509 6.97360 7.03817 7.28289 7.42801 7.45696 7.86901 8.11150 8.51878 8.76588 9.00381 9.37125 10.87391 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038368 B = 0.008272 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.602689 B = 3383.905750 C = 3468.390506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.248 3.752 4 H 0.056 0.944 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.665 5.665 14 C 0.562 3.438 15 N -0.558 5.558 16 C 0.190 3.810 17 C -0.291 4.291 18 C -0.084 4.084 19 C 0.191 3.809 20 N -0.583 5.583 21 H 0.028 0.972 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.268 0.732 27 H 0.407 0.593 28 H 0.155 0.845 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 3.208 4.128 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.145 3.855 4 H 0.074 0.926 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.296 5.296 14 C 0.206 3.794 15 N -0.281 5.281 16 C 0.020 3.980 17 C -0.301 4.301 18 C -0.142 4.142 19 C 0.022 3.978 20 N -0.306 5.306 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.243 0.757 28 H 0.173 0.827 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.643 2.636 3.682 14.375 hybrid contribution -0.998 0.604 -0.431 1.244 sum -14.642 3.240 3.252 15.344 Atomic orbital electron populations 1.21875 0.97601 0.98526 1.01588 1.22086 0.93630 0.99537 1.01208 1.19218 0.95315 0.88927 0.82033 0.92642 1.21027 0.88717 1.51664 0.95536 0.90341 1.24936 0.94900 0.93654 0.98796 1.69884 1.09761 1.48175 1.24530 0.86884 0.81343 0.79554 0.82134 1.19970 1.21230 1.18113 1.45367 1.09702 1.55956 1.18558 1.19678 0.88066 0.87145 0.84523 1.68193 1.04479 1.24268 1.31120 1.22751 0.91576 0.88198 0.95492 1.21065 1.00288 1.10736 0.97979 1.20355 0.92381 0.99669 1.01837 1.22643 0.87158 0.90560 0.97422 1.67976 1.20769 1.17174 1.24728 0.95272 0.94002 0.92601 0.91938 0.93138 0.92207 0.75678 0.82738 0.92190 0.92131 0.92183 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.45 37.16 0.31 -2.37 16 2 C -0.13 -2.72 5.59 -26.73 -0.15 -2.87 16 3 C 0.25 5.88 1.89 -69.08 -0.13 5.74 16 4 H 0.06 1.39 4.65 -51.93 -0.24 1.15 16 5 C -0.53 -14.46 9.05 -34.44 -0.31 -14.77 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 8 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 9 Si 0.87 21.31 26.99 -169.99 -4.59 16.72 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.26 -6.04 6.82 56.52 0.39 -5.65 16 13 N -0.67 -14.46 5.16 -56.92 -0.29 -14.76 16 14 C 0.56 11.43 7.01 -322.80 -2.26 9.17 16 15 N -0.56 -10.80 6.39 -13.93 -0.09 -10.89 16 16 C 0.19 2.90 11.00 -17.22 -0.19 2.71 16 17 C -0.29 -3.90 5.91 -104.35 -0.62 -4.52 16 18 C -0.08 -0.78 10.06 36.01 0.36 -0.41 16 19 C 0.19 2.81 11.00 -17.23 -0.19 2.62 16 20 N -0.58 -10.78 10.46 -13.93 -0.15 -10.93 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.04 0.82 5.58 -51.93 -0.29 0.53 16 23 H 0.05 1.10 7.70 -51.93 -0.40 0.70 16 24 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.41 8.54 8.71 -40.82 -0.36 8.18 16 28 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 267.32 15.07 4.03 4.03 Total: -1.00 -30.27 267.32 -7.83 -38.10 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.24 Total: 5.70 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.27 Total: -2.49 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.25 Total: -62.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.59 Total: 16.72 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.27 -7.83 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306530073.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.494 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds