Wall clock time and date at job start Sun Mar 29 2020 22:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 H 1.09000 * 109.47647 * 54.35938 * 3 2 1 5 5 C 1.50696 * 109.47294 * 174.36272 * 3 2 1 6 6 H 1.08001 * 120.00230 * 25.66373 * 5 3 2 7 7 C 1.37884 * 120.00212 * 205.66166 * 5 3 2 8 8 N 1.31511 * 119.99744 * 353.27746 * 7 5 3 9 9 Si 1.86791 * 120.00088 * 173.26940 * 7 5 3 10 10 H 1.48503 * 109.47253 * 60.00765 * 9 7 5 11 11 H 1.48508 * 109.47226 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47620 * 300.00452 * 9 7 5 13 13 N 1.46503 * 109.46891 * 294.36278 * 3 2 1 14 14 C 1.38406 * 120.00483 * 84.99828 * 13 3 2 15 15 N 1.32497 * 119.21100 * 359.73557 * 14 13 3 16 16 C 1.32276 * 120.73668 * 179.71633 * 15 14 13 17 17 C 1.38606 * 119.19861 * 0.54305 * 16 15 14 18 18 C 1.50697 * 120.72062 * 179.75411 * 17 16 15 19 19 C 1.38605 * 118.55708 * 359.72848 * 17 16 15 20 20 N 1.32278 * 119.19522 * 0.02562 * 19 17 16 21 21 H 1.09005 * 109.47357 * 299.99973 * 1 2 3 22 22 H 1.09000 * 109.47312 * 59.99629 * 1 2 3 23 23 H 1.09003 * 109.47397 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46856 * 240.00187 * 2 1 3 25 25 H 1.08997 * 109.47438 * 119.99867 * 2 1 3 26 26 H 0.97001 * 120.00047 * 354.66047 * 8 7 5 27 27 H 0.97006 * 119.99989 * 264.99231 * 13 3 2 28 28 H 1.08001 * 120.40231 * 180.24435 * 16 15 14 29 29 H 1.09006 * 109.46893 * 269.96939 * 18 17 16 30 30 H 1.08995 * 109.47805 * 29.97323 * 18 17 16 31 31 H 1.08996 * 109.47260 * 149.97922 * 18 17 16 32 32 H 1.08000 * 120.40462 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9847 0.8351 5 6 3.5404 1.4448 0.1396 6 1 4.1144 0.5897 -0.1859 7 6 4.1807 2.5385 0.6828 8 7 3.4999 3.6299 0.9567 9 14 6.0148 2.4699 1.0298 10 1 6.7490 2.2167 -0.2359 11 1 6.4577 3.7636 1.6091 12 1 6.2959 1.3749 1.9927 13 7 1.6655 2.0928 -1.2583 14 6 0.4168 2.6745 -1.3919 15 7 -0.4298 2.6295 -0.3737 16 6 -1.6288 3.1805 -0.4665 17 6 -1.9986 3.7997 -1.6501 18 6 -3.3581 4.4335 -1.7953 19 6 -1.0907 3.8237 -2.6971 20 7 0.0942 3.2580 -2.5368 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.5651 3.6941 0.7059 27 1 2.2929 2.1157 -1.9978 28 1 -2.3131 3.1441 0.3683 29 1 -4.0636 3.6962 -2.1784 30 1 -3.6981 4.7910 -0.8234 31 1 -3.2960 5.2716 -2.4893 32 1 -1.3478 4.2977 -3.6328 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306530074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:46 Heat of formation + Delta-G solvation = 21.497495 kcal Electronic energy + Delta-G solvation = -15105.766409 eV Core-core repulsion = 12679.356590 eV Total energy + Delta-G solvation = -2426.409819 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.77340 -38.20959 -34.97286 -34.51384 -33.78492 -32.32243 -28.82100 -26.87083 -25.53335 -24.83803 -23.09794 -21.79313 -19.55424 -18.64505 -18.10072 -16.50399 -15.82450 -15.70487 -15.62939 -15.12632 -14.89309 -14.55291 -14.27184 -14.06823 -13.68697 -13.01209 -12.85953 -12.61547 -12.56835 -12.24706 -11.94821 -11.86215 -11.55554 -11.49741 -10.92960 -10.70752 -10.54975 -9.81680 -8.74684 -8.51307 -6.54088 0.42749 0.45279 1.54087 1.59211 1.80477 2.30150 2.54229 3.11904 3.20970 3.52404 3.90383 4.06374 4.24808 4.29900 4.32919 4.36207 4.57422 4.84608 4.93361 4.97616 5.09318 5.17469 5.21361 5.26078 5.31230 5.50137 5.71602 5.80158 6.11807 6.18475 6.44734 6.48630 6.95019 7.35749 7.64007 8.63820 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.008101 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.439024 B = 3455.729558 C = 3802.602192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.113 4.113 3 C 0.262 3.738 4 H 0.023 0.977 5 C -0.617 4.617 6 H 0.057 0.943 7 C -0.016 4.016 8 N -0.918 5.918 9 Si 1.118 2.882 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.681 5.681 14 C 0.537 3.463 15 N -0.581 5.581 16 C 0.168 3.832 17 C -0.272 4.272 18 C -0.080 4.080 19 C 0.173 3.827 20 N -0.610 5.610 21 H 0.050 0.950 22 H 0.031 0.969 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.260 0.740 27 H 0.394 0.606 28 H 0.184 0.816 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 -0.681 -4.468 11.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C 0.161 3.839 4 H 0.041 0.959 5 C -0.656 4.656 6 H 0.075 0.925 7 C -0.219 4.219 8 N -0.552 5.552 9 Si 0.939 3.061 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.314 5.314 14 C 0.181 3.819 15 N -0.304 5.304 16 C 0.000 4.000 17 C -0.280 4.280 18 C -0.138 4.138 19 C 0.006 3.994 20 N -0.334 5.334 21 H 0.069 0.931 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.229 0.771 28 H 0.201 0.799 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.719 -0.403 -3.507 9.407 hybrid contribution -1.706 -0.345 -1.054 2.035 sum -10.425 -0.749 -4.561 11.404 Atomic orbital electron populations 1.21642 0.95469 0.99556 1.00958 1.21759 0.95731 0.97365 1.00393 1.18731 0.93510 0.89569 0.82135 0.95868 1.22480 0.92522 1.04695 1.45889 0.92477 1.27446 1.10441 0.91610 0.92361 1.70862 1.11170 1.28818 1.44359 0.82937 0.69232 0.76360 0.77599 1.19420 1.21374 1.19118 1.46124 1.10062 1.57245 1.17941 1.19957 0.88377 0.88138 0.85435 1.68175 1.05703 1.25430 1.31118 1.23411 0.91018 0.88133 0.97408 1.21533 1.01660 1.08475 0.96381 1.20444 0.89851 1.00050 1.03412 1.23366 0.86387 0.90350 0.99283 1.67980 1.22719 1.17957 1.24701 0.93115 0.95013 0.92906 0.93673 0.92178 0.92987 0.77110 0.79900 0.90509 0.90739 0.90468 0.79317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.44 71.98 0.61 -4.04 16 2 C -0.11 -4.98 5.58 30.59 0.17 -4.81 16 3 C 0.26 13.39 1.72 44.24 0.08 13.47 16 4 H 0.02 1.35 6.50 -2.39 -0.02 1.33 16 5 C -0.62 -33.78 8.49 25.60 0.22 -33.56 16 6 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 7 C -0.02 -0.92 5.45 84.66 0.46 -0.45 16 8 N -0.92 -56.13 13.56 21.45 0.29 -55.84 16 9 Si 1.12 48.94 29.91 68.60 2.05 50.99 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 13 N -0.68 -33.21 5.11 -334.02 -1.71 -34.92 16 14 C 0.54 24.34 7.03 261.49 1.84 26.18 16 15 N -0.58 -24.51 6.35 -197.99 -1.26 -25.77 16 16 C 0.17 5.47 11.00 84.71 0.93 6.40 16 17 C -0.27 -7.47 5.91 -19.69 -0.12 -7.59 16 18 C -0.08 -1.35 10.06 71.23 0.72 -0.63 16 19 C 0.17 5.40 11.00 84.71 0.93 6.33 16 20 N -0.61 -25.00 10.46 -197.99 -2.07 -27.07 16 21 H 0.05 2.02 7.69 -2.38 -0.02 2.00 16 22 H 0.03 1.30 5.57 -2.39 -0.01 1.29 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.26 16.53 6.93 -92.71 -0.64 15.89 16 27 H 0.39 19.33 8.71 -92.70 -0.81 18.52 16 28 H 0.18 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 31 H 0.08 1.08 8.10 -2.39 -0.02 1.07 16 32 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -67.07 269.49 3.58 -63.49 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.44 Total: 27.81 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.84 Total: 1.31 kcal Atomic # 7 Polarization: -138.85 SS G_CDS: -4.74 Total: -143.59 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Total: -67.07 3.58 -63.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306530074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.984 kcal (2) G-P(sol) polarization free energy of solvation -67.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds