Wall clock time and date at job start Sun Mar 29 2020 22:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38201 * 119.95300 * 2 1 4 4 N 1.32241 * 120.19512 * 179.97438 * 3 2 1 5 5 C 1.31945 * 120.08666 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.05480 * 179.97438 * 5 4 3 7 7 C 1.39293 * 119.89362 * 0.02562 * 5 4 3 8 8 N 1.39004 * 120.09727 * 180.02562 * 7 5 4 9 9 C 1.46493 * 120.00512 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47289 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47306 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99821 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00181 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99874 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99993 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47315 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47351 * 119.99741 * 15 13 11 18 18 H 1.48501 * 109.47161 * 239.99681 * 15 13 11 19 19 N 1.32224 * 119.94809 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47304 * 269.99700 * 1 2 3 21 21 H 1.08997 * 109.47022 * 30.00241 * 1 2 3 22 22 H 1.09004 * 109.47044 * 149.99654 * 1 2 3 23 23 H 1.08003 * 119.89951 * 0.02562 * 3 2 1 24 24 H 1.08997 * 109.47346 * 270.02557 * 6 5 4 25 25 H 1.09003 * 109.47049 * 30.02449 * 6 5 4 26 26 H 1.09003 * 109.46865 * 150.02753 * 6 5 4 27 27 H 0.97003 * 119.99239 * 359.97438 * 8 7 5 28 28 H 1.08995 * 109.47263 * 300.00422 * 9 8 7 29 29 H 1.09002 * 109.46936 * 60.00166 * 9 8 7 30 30 H 1.08995 * 109.47401 * 300.00445 * 10 9 8 31 31 H 1.09001 * 109.47340 * 60.00573 * 10 9 8 32 32 H 0.96994 * 119.99815 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1974 0.0000 4 7 3.5194 1.2030 0.0005 5 6 4.1856 0.0641 0.0005 6 6 5.6926 0.0714 0.0005 7 6 3.4939 -1.1449 -0.0006 8 7 4.1915 -2.3471 0.0000 9 6 3.4619 -3.6175 -0.0006 10 6 4.4588 -4.7781 -0.0005 11 6 3.7082 -6.0850 -0.0017 12 1 2.6282 -6.0874 -0.0021 13 6 4.4003 -7.2775 -0.0013 14 7 5.7154 -7.2745 0.0007 15 14 3.4699 -8.8973 -0.0021 16 1 2.0093 -8.6292 -0.0025 17 1 3.8312 -9.6751 -1.2144 18 1 3.8296 -9.6753 1.2106 19 7 2.1670 -1.1457 -0.0005 20 1 -0.3634 -0.0001 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 1.6546 2.1314 0.0004 24 1 6.0559 0.0735 -1.0271 25 1 6.0517 0.9629 0.5147 26 1 6.0601 -0.8172 0.5139 27 1 5.1615 -2.3449 0.0007 28 1 2.8347 -3.6766 0.8888 29 1 2.8361 -3.6766 -0.8911 30 1 5.0857 -4.7188 -0.8901 31 1 5.0849 -4.7193 0.8898 32 1 6.2023 -8.1134 0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307284125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:43 Heat of formation + Delta-G solvation = 29.795571 kcal Electronic energy + Delta-G solvation = -14338.789327 eV Core-core repulsion = 11912.739340 eV Total energy + Delta-G solvation = -2426.049987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83351 -36.32235 -34.60749 -33.38645 -31.62217 -30.16559 -28.99964 -25.60084 -24.96827 -22.82971 -21.86771 -20.80918 -17.51491 -17.11796 -16.07080 -15.66064 -15.29266 -14.54771 -13.97343 -13.82554 -13.41889 -13.37950 -12.69869 -12.32092 -12.30666 -12.23466 -12.08814 -11.38439 -11.26067 -11.08201 -10.94290 -10.62140 -10.26552 -9.64480 -9.40616 -9.33196 -8.73415 -8.46336 -7.36267 -6.11656 -4.14549 1.18928 1.62201 3.26526 3.33953 3.38198 3.52855 4.00242 4.36997 4.44744 4.53954 4.77165 5.09503 5.25576 5.37338 5.39542 5.57067 5.64963 5.68961 5.75194 5.98618 6.09959 6.26714 6.34001 6.56170 6.73755 7.31709 7.42200 7.59179 7.60211 7.87740 7.96952 8.22758 8.40761 8.91468 9.50389 11.00119 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039673 B = 0.005760 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.597319 B = 4859.790963 C = 5534.338850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.128 3.872 3 C -0.040 4.040 4 N -0.405 5.405 5 C -0.001 4.001 6 C -0.091 4.091 7 C 0.373 3.627 8 N -0.702 5.702 9 C 0.131 3.869 10 C 0.011 3.989 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.502 5.502 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.157 0.843 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.409 0.591 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 14.138 0.003 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.014 4.014 3 C -0.201 4.201 4 N -0.118 5.118 5 C -0.152 4.152 6 C -0.149 4.149 7 C 0.131 3.869 8 N -0.332 5.332 9 C 0.008 3.992 10 C -0.027 4.027 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.227 5.227 20 H 0.098 0.902 21 H 0.095 0.905 22 H 0.097 0.903 23 H 0.175 0.825 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.246 0.754 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.891 13.805 0.004 14.646 hybrid contribution -0.083 -0.987 0.008 0.991 sum -4.974 12.818 0.012 13.749 Atomic orbital electron populations 1.20664 0.88393 1.03538 1.03161 1.21959 0.97668 0.88785 0.93032 1.22929 0.90391 0.98487 1.08258 1.67931 1.08778 1.28475 1.06626 1.21495 0.97651 0.87982 1.08023 1.20494 0.88418 1.03166 1.02816 1.19293 0.89177 0.87713 0.90765 1.45264 1.08684 1.03022 1.76267 1.21710 0.95885 0.80961 1.00608 1.19340 0.94285 0.91250 0.97811 1.21063 0.93240 0.90287 1.51277 0.92199 1.25002 0.94887 0.99439 0.94980 1.69965 1.06035 1.26868 1.50410 0.86454 0.80122 0.83338 0.77640 1.19587 1.20914 1.20920 1.67908 1.06458 1.29475 1.18869 0.90235 0.90508 0.90301 0.82543 0.90730 0.90494 0.91066 0.75356 0.92719 0.92705 0.95979 0.95996 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.19 36.00 0.37 -0.67 16 2 C 0.13 1.86 6.78 -82.44 -0.56 1.30 16 3 C -0.04 -0.55 10.86 -17.39 -0.19 -0.74 16 4 N -0.40 -6.33 10.41 -9.12 -0.10 -6.43 16 5 C 0.00 -0.01 6.81 -82.15 -0.56 -0.57 16 6 C -0.09 -1.12 9.76 36.00 0.35 -0.77 16 7 C 0.37 6.58 7.46 -154.72 -1.15 5.42 16 8 N -0.70 -12.67 5.61 -60.32 -0.34 -13.01 16 9 C 0.13 2.77 5.65 -4.05 -0.02 2.75 16 10 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 11 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 12 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 15 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 N -0.50 -8.97 9.66 -8.48 -0.08 -9.05 16 20 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.82 6.56 -51.93 -0.34 0.48 16 27 H 0.41 6.62 6.47 -40.82 -0.26 6.35 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 277.36 15.07 4.18 4.18 Total: -1.00 -31.09 277.36 -7.31 -38.41 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.37 Total: 1.33 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.32 Total: -6.30 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.22 Total: -53.87 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.09 -7.31 -38.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307284125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.201 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds