Wall clock time and date at job start Sun Mar 29 2020 22:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38201 * 119.95300 * 2 1 4 4 N 1.32241 * 120.19512 * 179.97438 * 3 2 1 5 5 C 1.31945 * 120.08666 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.05480 * 179.97438 * 5 4 3 7 7 C 1.39293 * 119.89362 * 0.02562 * 5 4 3 8 8 N 1.39004 * 120.09727 * 180.02562 * 7 5 4 9 9 C 1.46493 * 120.00512 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47289 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47306 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99821 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00181 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99874 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99993 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47315 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47351 * 119.99741 * 15 13 11 18 18 H 1.48501 * 109.47161 * 239.99681 * 15 13 11 19 19 N 1.32224 * 119.94809 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47304 * 269.99700 * 1 2 3 21 21 H 1.08997 * 109.47022 * 30.00241 * 1 2 3 22 22 H 1.09004 * 109.47044 * 149.99654 * 1 2 3 23 23 H 1.08003 * 119.89951 * 0.02562 * 3 2 1 24 24 H 1.08997 * 109.47346 * 270.02557 * 6 5 4 25 25 H 1.09003 * 109.47049 * 30.02449 * 6 5 4 26 26 H 1.09003 * 109.46865 * 150.02753 * 6 5 4 27 27 H 0.97003 * 119.99239 * 359.97438 * 8 7 5 28 28 H 1.08995 * 109.47263 * 300.00422 * 9 8 7 29 29 H 1.09002 * 109.46936 * 60.00166 * 9 8 7 30 30 H 1.08995 * 109.47401 * 300.00445 * 10 9 8 31 31 H 1.09001 * 109.47340 * 60.00573 * 10 9 8 32 32 H 0.96994 * 119.99815 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1974 0.0000 4 7 3.5194 1.2030 0.0005 5 6 4.1856 0.0641 0.0005 6 6 5.6926 0.0714 0.0005 7 6 3.4939 -1.1449 -0.0006 8 7 4.1915 -2.3471 0.0000 9 6 3.4619 -3.6175 -0.0006 10 6 4.4588 -4.7781 -0.0005 11 6 3.7082 -6.0850 -0.0017 12 1 2.6282 -6.0874 -0.0021 13 6 4.4003 -7.2775 -0.0013 14 7 5.7154 -7.2745 0.0007 15 14 3.4699 -8.8973 -0.0021 16 1 2.0093 -8.6292 -0.0025 17 1 3.8312 -9.6751 -1.2144 18 1 3.8296 -9.6753 1.2106 19 7 2.1670 -1.1457 -0.0005 20 1 -0.3634 -0.0001 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 1.6546 2.1314 0.0004 24 1 6.0559 0.0735 -1.0271 25 1 6.0517 0.9629 0.5147 26 1 6.0601 -0.8172 0.5139 27 1 5.1615 -2.3449 0.0007 28 1 2.8347 -3.6766 0.8888 29 1 2.8361 -3.6766 -0.8911 30 1 5.0857 -4.7188 -0.8901 31 1 5.0849 -4.7193 0.8898 32 1 6.2023 -8.1134 0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307284125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:42 Heat of formation + Delta-G solvation = 9.489196 kcal Electronic energy + Delta-G solvation = -14339.669878 eV Core-core repulsion = 11912.739340 eV Total energy + Delta-G solvation = -2426.930538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.03324 -37.79204 -35.75142 -35.30999 -33.21867 -31.16498 -30.66229 -26.95882 -26.43916 -24.34678 -23.15645 -22.44097 -18.83887 -18.77778 -17.82535 -16.75294 -16.56919 -16.47482 -15.52877 -15.46351 -14.57504 -14.30699 -14.21533 -13.69735 -13.37001 -13.34674 -13.12536 -12.99846 -12.98205 -12.60448 -12.51139 -12.34395 -11.89151 -11.59763 -11.40559 -10.75938 -10.57013 -9.95237 -8.67028 -8.25507 -6.36263 0.03011 0.39203 1.40454 1.41147 1.54430 2.16358 2.42589 2.82650 3.09425 3.35100 3.40197 3.59890 4.08189 4.28867 4.36371 4.51094 4.51644 4.70706 4.75368 4.80614 4.85918 4.88556 5.03702 5.20747 5.32660 5.50035 5.56393 5.73030 6.02078 6.17004 6.21369 6.74188 6.78569 7.13325 7.33363 8.86892 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039673 B = 0.005760 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.597319 B = 4859.790963 C = 5534.338850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.115 3.885 3 C -0.029 4.029 4 N -0.419 5.419 5 C -0.007 4.007 6 C -0.089 4.089 7 C 0.348 3.652 8 N -0.707 5.707 9 C 0.159 3.841 10 C 0.020 3.980 11 C -0.543 4.543 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.967 3.033 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.277 1.277 19 N -0.534 5.534 20 H 0.093 0.907 21 H 0.110 0.890 22 H 0.068 0.932 23 H 0.197 0.803 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.415 0.585 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 15.170 -0.002 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 C -0.190 4.190 4 N -0.132 5.132 5 C -0.156 4.156 6 C -0.147 4.147 7 C 0.108 3.892 8 N -0.340 5.340 9 C 0.035 3.965 10 C -0.017 4.017 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.791 3.209 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 N -0.259 5.259 20 H 0.111 0.889 21 H 0.129 0.871 22 H 0.087 0.913 23 H 0.214 0.786 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.254 0.746 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.158 14.875 -0.001 16.100 hybrid contribution 0.243 -1.154 0.011 1.180 sum -5.915 13.721 0.009 14.942 Atomic orbital electron populations 1.20794 0.85453 1.04736 1.04352 1.22671 0.99598 0.88158 0.92238 1.23632 0.90058 0.99842 1.05450 1.68052 1.09753 1.28148 1.07278 1.21853 0.99063 0.87317 1.07321 1.20568 0.86459 1.03952 1.03745 1.19475 0.89557 0.87848 0.92299 1.44927 1.08803 1.02282 1.78030 1.21099 0.94543 0.81374 0.99471 1.19150 0.94374 0.92177 0.96012 1.21471 0.93585 0.91742 1.51393 0.92152 1.25902 0.95772 1.03224 0.94379 1.70074 1.07575 1.28037 1.51113 0.85366 0.79008 0.78612 0.77880 1.18768 1.20231 1.20249 1.67895 1.06942 1.31608 1.19437 0.88871 0.87103 0.91294 0.78634 0.89655 0.89262 0.90666 0.74624 0.93818 0.93803 0.97689 0.97700 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.19 71.23 0.73 -1.01 16 2 C 0.11 3.14 6.78 42.49 0.29 3.43 16 3 C -0.03 -0.72 10.86 84.62 0.92 0.20 16 4 N -0.42 -12.29 10.41 -182.78 -1.90 -14.20 16 5 C -0.01 -0.21 6.81 42.79 0.29 0.09 16 6 C -0.09 -2.12 9.76 71.23 0.69 -1.43 16 7 C 0.35 12.28 7.46 133.02 0.99 13.28 16 8 N -0.71 -26.10 5.61 -344.74 -1.93 -28.04 16 9 C 0.16 6.94 5.65 86.38 0.49 7.42 16 10 C 0.02 1.05 5.09 29.85 0.15 1.20 16 11 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 15 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 16 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 19 N -0.53 -18.88 9.66 -180.74 -1.75 -20.63 16 20 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.11 1.24 8.08 -2.39 -0.02 1.22 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.20 3.20 8.06 -2.91 -0.02 3.17 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.70 6.56 -2.39 -0.02 1.69 16 27 H 0.41 13.81 6.47 -92.71 -0.60 13.21 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -66.91 277.36 2.49 -64.42 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.51 Total: 13.75 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.25 Total: -6.34 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -5.30 Total: -117.50 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.91 2.49 -64.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307284125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.911 kcal (2) G-P(sol) polarization free energy of solvation -66.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds