Wall clock time and date at job start Sun Mar 29 2020 22:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47353 * 2 1 4 4 H 1.09004 * 109.46989 * 56.08012 * 3 2 1 5 5 C 1.50703 * 109.47535 * 176.07870 * 3 2 1 6 6 H 1.07996 * 119.99919 * 115.00482 * 5 3 2 7 7 C 1.37874 * 119.99760 * 295.00675 * 5 3 2 8 8 N 1.31510 * 120.00310 * 349.85672 * 7 5 3 9 9 Si 1.86798 * 119.99787 * 169.57529 * 7 5 3 10 10 H 1.48505 * 109.47008 * 60.00090 * 9 7 5 11 11 H 1.48503 * 109.47425 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47423 * 300.00232 * 9 7 5 13 13 N 1.46494 * 109.47256 * 296.08123 * 3 2 1 14 14 C 1.38548 * 120.00310 * 102.26969 * 13 3 2 15 15 C 1.39662 * 120.53009 * 3.27455 * 14 13 3 16 16 C 1.38076 * 118.33434 * 179.78024 * 15 14 13 17 17 C 1.50702 * 120.40174 * 180.24149 * 16 15 14 18 18 N 1.32576 * 119.19597 * 0.49802 * 16 15 14 19 19 C 1.31765 * 121.01496 * 359.74136 * 18 16 15 20 20 N 1.31777 * 121.82978 * 0.02562 * 19 18 16 21 21 H 1.08992 * 109.47184 * 305.32636 * 1 2 3 22 22 H 1.08999 * 109.46950 * 65.32760 * 1 2 3 23 23 H 1.08997 * 109.47093 * 185.32584 * 1 2 3 24 24 H 1.09000 * 109.47076 * 239.99952 * 2 1 3 25 25 H 1.08999 * 109.46925 * 120.00292 * 2 1 3 26 26 H 0.97004 * 120.00284 * 356.09960 * 8 7 5 27 27 H 0.97002 * 120.00473 * 282.27406 * 13 3 2 28 28 H 1.08004 * 120.83028 * 0.02562 * 15 14 13 29 29 H 1.08997 * 109.46610 * 270.25777 * 17 16 15 30 30 H 1.08995 * 109.46877 * 30.25948 * 17 16 15 31 31 H 1.08994 * 109.47055 * 150.25712 * 17 16 15 32 32 H 1.08003 * 119.08257 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6205 1.9761 0.8528 5 6 3.5439 1.4436 0.0972 6 1 4.1377 1.8199 -0.7227 7 6 4.1617 0.9641 1.2327 8 7 3.4492 0.6931 2.3043 9 14 6.0097 0.6921 1.2464 10 1 6.7014 1.9785 0.9776 11 1 6.4242 0.1750 2.5754 12 1 6.3728 -0.2938 0.1970 13 7 1.6304 2.1052 -1.2405 14 6 0.5592 2.9839 -1.2354 15 6 -0.0949 3.2983 -0.0421 16 6 -1.1540 4.1829 -0.0887 17 6 -1.8896 4.5590 1.1717 18 7 -1.5194 4.6934 -1.2564 19 6 -0.8848 4.3730 -2.3659 20 7 0.1337 3.5368 -2.3672 21 1 -0.3633 0.5942 0.8384 22 1 -0.3633 0.4290 -0.9338 23 1 -0.3633 -1.0232 0.0954 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.4981 0.8834 2.3154 27 1 2.1090 1.9289 -2.0656 28 1 0.2224 2.8634 0.8942 29 1 -2.7125 3.8628 1.3335 30 1 -1.2049 4.5153 2.0186 31 1 -2.2832 5.5707 1.0745 32 1 -1.2090 4.8071 -3.3001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307374342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:19 Heat of formation + Delta-G solvation = 31.204045 kcal Electronic energy + Delta-G solvation = -15040.734635 eV Core-core repulsion = 12614.745724 eV Total energy + Delta-G solvation = -2425.988911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40132 -36.92326 -34.08648 -32.94999 -31.50658 -30.13658 -27.90941 -26.46469 -23.83504 -23.05883 -21.58696 -20.23137 -17.92521 -16.92720 -16.39148 -14.98308 -14.67083 -14.42253 -14.16401 -13.85097 -13.49996 -12.86227 -12.72384 -12.59937 -12.24521 -12.04939 -11.76705 -10.99521 -10.88151 -10.71978 -10.35594 -10.34777 -10.20461 -9.84655 -9.30810 -8.86771 -8.71886 -8.49672 -7.32975 -6.59928 -4.34200 1.55241 1.94045 3.33515 3.34568 3.53254 3.81201 4.36521 4.40385 4.55256 4.85566 5.10635 5.33041 5.55457 5.69687 5.72165 5.82984 5.88837 6.02171 6.07830 6.12919 6.22314 6.50807 6.58074 6.75316 6.77622 7.02316 7.21247 7.37845 7.67197 7.93925 8.27656 8.37523 8.58182 8.82662 9.35108 10.76220 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.007750 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.839549 B = 3611.886383 C = 3689.526615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.259 3.741 4 H 0.044 0.956 5 C -0.617 4.617 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.898 5.898 9 Si 1.068 2.932 10 H -0.287 1.287 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.447 3.553 15 C -0.292 4.292 16 C 0.188 3.812 17 C -0.101 4.101 18 N -0.584 5.584 19 C 0.332 3.668 20 N -0.600 5.600 21 H 0.046 0.954 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.271 0.729 27 H 0.399 0.601 28 H 0.141 0.859 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 3.034 -3.115 8.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.156 3.844 4 H 0.061 0.939 5 C -0.655 4.655 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.533 5.533 9 Si 0.895 3.105 10 H -0.214 1.214 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.302 5.302 14 C 0.200 3.800 15 C -0.321 4.321 16 C 0.048 3.952 17 C -0.159 4.159 18 N -0.306 5.306 19 C 0.041 3.959 20 N -0.327 5.327 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.234 0.766 28 H 0.159 0.841 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.731 2.717 -2.750 6.912 hybrid contribution -0.741 0.080 -0.656 0.993 sum -6.472 2.797 -3.405 7.829 Atomic orbital electron populations 1.21824 0.98157 0.99955 1.00522 1.22047 0.92945 1.00023 1.02245 1.19074 0.95552 0.88293 0.81486 0.93854 1.22063 0.90138 1.47815 1.05506 0.92446 1.25784 1.06980 0.93174 0.91557 1.70828 1.09630 1.44172 1.28674 0.83559 0.73954 0.76714 0.76284 1.21351 1.20555 1.21208 1.45167 1.28704 1.42726 1.13646 1.18752 0.86322 0.86069 0.88832 1.22076 1.02681 1.07606 0.99732 1.21226 0.90813 0.89297 0.93826 1.20688 0.99947 1.02573 0.92684 1.68165 1.33476 1.30096 0.98876 1.24402 0.86339 0.88885 0.96235 1.67969 1.18983 1.16606 1.29132 0.93491 0.94114 0.94103 0.93133 0.90470 0.91787 0.76636 0.84106 0.90355 0.90560 0.90527 0.79819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.00 37.16 0.33 -2.41 16 2 C -0.13 -2.86 5.35 -26.73 -0.14 -3.01 16 3 C 0.26 5.94 1.80 -69.09 -0.12 5.81 16 4 H 0.04 1.06 4.83 -51.93 -0.25 0.81 16 5 C -0.62 -15.94 8.73 -34.44 -0.30 -16.24 16 6 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 7 C 0.03 0.82 5.16 -17.82 -0.09 0.73 16 8 N -0.90 -24.70 12.85 55.43 0.71 -23.99 16 9 Si 1.07 23.57 29.92 -169.99 -5.09 18.48 16 10 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.68 -14.19 4.72 -54.91 -0.26 -14.45 16 14 C 0.45 9.01 6.84 -154.79 -1.06 7.95 16 15 C -0.29 -5.56 8.37 -39.11 -0.33 -5.88 16 16 C 0.19 3.22 6.81 -82.33 -0.56 2.66 16 17 C -0.10 -1.31 10.21 36.01 0.37 -0.95 16 18 N -0.58 -10.12 10.37 -10.88 -0.11 -10.24 16 19 C 0.33 5.58 12.28 -92.19 -1.13 4.45 16 20 N -0.60 -11.45 10.47 -13.81 -0.14 -11.60 16 21 H 0.05 0.85 7.77 -51.93 -0.40 0.45 16 22 H 0.04 0.77 7.33 -51.93 -0.38 0.39 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.08 1.81 6.51 -51.93 -0.34 1.47 16 26 H 0.27 7.34 6.37 -40.82 -0.26 7.08 16 27 H 0.40 8.12 8.89 -40.82 -0.36 7.76 16 28 H 0.14 2.72 5.76 -52.48 -0.30 2.42 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 268.21 15.07 4.04 4.04 Total: -1.00 -28.19 268.21 -7.92 -36.12 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.04 Total: 8.51 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.04 Total: -6.88 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.20 Total: -60.27 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.09 Total: 18.48 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.19 -7.92 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307374342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.321 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds