Wall clock time and date at job start Sun Mar 29 2020 22:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47353 * 2 1 4 4 H 1.09004 * 109.46989 * 56.08012 * 3 2 1 5 5 C 1.50703 * 109.47535 * 176.07870 * 3 2 1 6 6 H 1.07996 * 119.99919 * 115.00482 * 5 3 2 7 7 C 1.37874 * 119.99760 * 295.00675 * 5 3 2 8 8 N 1.31510 * 120.00310 * 349.85672 * 7 5 3 9 9 Si 1.86798 * 119.99787 * 169.57529 * 7 5 3 10 10 H 1.48505 * 109.47008 * 60.00090 * 9 7 5 11 11 H 1.48503 * 109.47425 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47423 * 300.00232 * 9 7 5 13 13 N 1.46494 * 109.47256 * 296.08123 * 3 2 1 14 14 C 1.38548 * 120.00310 * 102.26969 * 13 3 2 15 15 C 1.39662 * 120.53009 * 3.27455 * 14 13 3 16 16 C 1.38076 * 118.33434 * 179.78024 * 15 14 13 17 17 C 1.50702 * 120.40174 * 180.24149 * 16 15 14 18 18 N 1.32576 * 119.19597 * 0.49802 * 16 15 14 19 19 C 1.31765 * 121.01496 * 359.74136 * 18 16 15 20 20 N 1.31777 * 121.82978 * 0.02562 * 19 18 16 21 21 H 1.08992 * 109.47184 * 305.32636 * 1 2 3 22 22 H 1.08999 * 109.46950 * 65.32760 * 1 2 3 23 23 H 1.08997 * 109.47093 * 185.32584 * 1 2 3 24 24 H 1.09000 * 109.47076 * 239.99952 * 2 1 3 25 25 H 1.08999 * 109.46925 * 120.00292 * 2 1 3 26 26 H 0.97004 * 120.00284 * 356.09960 * 8 7 5 27 27 H 0.97002 * 120.00473 * 282.27406 * 13 3 2 28 28 H 1.08004 * 120.83028 * 0.02562 * 15 14 13 29 29 H 1.08997 * 109.46610 * 270.25777 * 17 16 15 30 30 H 1.08995 * 109.46877 * 30.25948 * 17 16 15 31 31 H 1.08994 * 109.47055 * 150.25712 * 17 16 15 32 32 H 1.08003 * 119.08257 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6205 1.9761 0.8528 5 6 3.5439 1.4436 0.0972 6 1 4.1377 1.8199 -0.7227 7 6 4.1617 0.9641 1.2327 8 7 3.4492 0.6931 2.3043 9 14 6.0097 0.6921 1.2464 10 1 6.7014 1.9785 0.9776 11 1 6.4242 0.1750 2.5754 12 1 6.3728 -0.2938 0.1970 13 7 1.6304 2.1052 -1.2405 14 6 0.5592 2.9839 -1.2354 15 6 -0.0949 3.2983 -0.0421 16 6 -1.1540 4.1829 -0.0887 17 6 -1.8896 4.5590 1.1717 18 7 -1.5194 4.6934 -1.2564 19 6 -0.8848 4.3730 -2.3659 20 7 0.1337 3.5368 -2.3672 21 1 -0.3633 0.5942 0.8384 22 1 -0.3633 0.4290 -0.9338 23 1 -0.3633 -1.0232 0.0954 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.4981 0.8834 2.3154 27 1 2.1090 1.9289 -2.0656 28 1 0.2224 2.8634 0.8942 29 1 -2.7125 3.8628 1.3335 30 1 -1.2049 4.5153 2.0186 31 1 -2.2832 5.5707 1.0745 32 1 -1.2090 4.8071 -3.3001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307374342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:18 Heat of formation + Delta-G solvation = 15.165934 kcal Electronic energy + Delta-G solvation = -15041.430100 eV Core-core repulsion = 12614.745724 eV Total energy + Delta-G solvation = -2426.684376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.82778 -38.60104 -35.63082 -34.55496 -33.19255 -31.63938 -29.19775 -28.22564 -25.49595 -24.67200 -23.01697 -21.94667 -19.63812 -18.59250 -17.90921 -16.45328 -16.11068 -15.91050 -15.81014 -15.57129 -15.08258 -14.52774 -14.02249 -13.91115 -13.86934 -13.50175 -13.11837 -12.64876 -12.57596 -12.42815 -12.00642 -11.93690 -11.89452 -11.43114 -10.86163 -10.58319 -10.47290 -10.14232 -8.94674 -8.65143 -6.41618 0.17235 0.47768 1.55131 1.59882 1.80145 2.23024 2.55695 2.98542 3.10481 3.32751 3.52847 3.87752 4.13649 4.28766 4.31811 4.44322 4.48160 4.60596 4.74413 4.78059 4.93454 5.02112 5.07043 5.08694 5.19074 5.45979 5.52899 5.77000 5.81623 6.12930 6.43537 6.59225 6.76882 7.32181 7.41327 8.69673 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.007750 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.839549 B = 3611.886383 C = 3689.526615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.267 3.733 4 H 0.028 0.972 5 C -0.630 4.630 6 H 0.049 0.951 7 C -0.011 4.011 8 N -0.920 5.920 9 Si 1.110 2.890 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.684 5.684 14 C 0.432 3.568 15 C -0.312 4.312 16 C 0.192 3.808 17 C -0.099 4.099 18 N -0.586 5.586 19 C 0.331 3.669 20 N -0.613 5.613 21 H 0.047 0.953 22 H 0.037 0.963 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.263 0.737 27 H 0.399 0.601 28 H 0.132 0.868 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 3.587 -3.578 9.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.163 3.837 4 H 0.046 0.954 5 C -0.668 4.668 6 H 0.067 0.933 7 C -0.212 4.212 8 N -0.555 5.555 9 Si 0.932 3.068 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.310 5.310 14 C 0.187 3.813 15 C -0.340 4.340 16 C 0.052 3.948 17 C -0.157 4.157 18 N -0.307 5.307 19 C 0.041 3.959 20 N -0.340 5.340 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.233 0.767 28 H 0.149 0.851 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.596 3.290 -3.239 8.052 hybrid contribution -0.577 0.002 -0.559 0.803 sum -7.174 3.292 -3.798 8.759 Atomic orbital electron populations 1.21674 0.95779 1.01243 1.00378 1.21872 0.94984 0.98647 1.00891 1.18805 0.93992 0.89044 0.81869 0.95428 1.22382 0.91900 1.47416 1.05128 0.93300 1.26979 1.10265 0.92715 0.91280 1.70916 1.09425 1.45714 1.29455 0.83007 0.69986 0.77341 0.76472 1.20299 1.20776 1.19687 1.44922 1.29634 1.43659 1.12806 1.18926 0.86349 0.86244 0.89774 1.22110 1.03903 1.08988 0.99001 1.21849 0.89946 0.87799 0.95241 1.20808 1.00251 1.03787 0.90813 1.68317 1.33387 1.29957 0.99082 1.25248 0.85214 0.87763 0.97649 1.68016 1.19922 1.17291 1.28756 0.93388 0.94361 0.92067 0.93421 0.92684 0.92628 0.76651 0.85071 0.88454 0.89814 0.89067 0.75935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.00 71.98 0.65 -4.23 16 2 C -0.12 -5.40 5.35 30.59 0.16 -5.24 16 3 C 0.27 12.46 1.80 44.24 0.08 12.54 16 4 H 0.03 1.40 4.83 -2.38 -0.01 1.39 16 5 C -0.63 -33.01 8.73 25.60 0.22 -32.79 16 6 H 0.05 2.58 7.84 -2.91 -0.02 2.56 16 7 C -0.01 -0.59 5.16 84.65 0.44 -0.16 16 8 N -0.92 -51.28 12.85 21.45 0.28 -51.00 16 9 Si 1.11 47.38 29.92 68.60 2.05 49.43 16 10 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.68 -28.94 4.72 -327.63 -1.55 -30.49 16 14 C 0.43 17.30 6.84 133.18 0.91 18.21 16 15 C -0.31 -11.72 8.37 22.58 0.19 -11.53 16 16 C 0.19 6.25 6.81 42.41 0.29 6.54 16 17 C -0.10 -2.33 10.21 71.24 0.73 -1.60 16 18 N -0.59 -18.92 10.37 -188.35 -1.95 -20.88 16 19 C 0.33 10.37 12.28 180.90 2.22 12.59 16 20 N -0.61 -22.67 10.47 -197.60 -2.07 -24.74 16 21 H 0.05 1.72 7.77 -2.39 -0.02 1.71 16 22 H 0.04 1.40 7.33 -2.39 -0.02 1.39 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 25 H 0.05 2.62 6.51 -2.39 -0.02 2.61 16 26 H 0.26 14.64 6.37 -92.71 -0.59 14.05 16 27 H 0.40 16.46 8.89 -92.71 -0.82 15.63 16 28 H 0.13 5.15 5.76 -2.91 -0.02 5.13 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.22 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -59.66 268.21 3.13 -56.53 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.48 Total: 26.82 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.89 Total: -5.67 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.30 Total: -127.11 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.05 Total: 49.43 kcal Total: -59.66 3.13 -56.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307374342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.692 kcal (2) G-P(sol) polarization free energy of solvation -59.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds