Wall clock time and date at job start Sun Mar 29 2020 22:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 H 1.09007 * 109.46688 * 305.45600 * 3 2 1 5 5 C 1.50700 * 109.47329 * 185.45556 * 3 2 1 6 6 H 1.07995 * 119.99913 * 244.90282 * 5 3 2 7 7 C 1.37874 * 119.99773 * 64.90710 * 5 3 2 8 8 N 1.31512 * 120.00139 * 7.03134 * 7 5 3 9 9 Si 1.86799 * 119.99946 * 187.02902 * 7 5 3 10 10 H 1.48501 * 109.47437 * 84.98997 * 9 7 5 11 11 H 1.48496 * 109.47542 * 204.99604 * 9 7 5 12 12 H 1.48509 * 109.47222 * 324.99296 * 9 7 5 13 13 N 1.46502 * 109.47000 * 65.45437 * 3 2 1 14 14 C 1.38538 * 120.00071 * 274.99896 * 13 3 2 15 15 C 1.39667 * 120.53031 * 359.72777 * 14 13 3 16 16 C 1.38081 * 118.33409 * 179.78021 * 15 14 13 17 17 N 1.32578 * 119.19630 * 0.48934 * 16 15 14 18 18 C 1.31760 * 121.01237 * 359.74494 * 17 16 15 19 19 C 1.50703 * 119.08202 * 180.02562 * 18 17 16 20 20 N 1.31771 * 121.83642 * 0.02562 * 18 17 16 21 21 H 1.08999 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47204 * 299.99806 * 1 2 3 23 23 H 1.08996 * 109.47642 * 60.00153 * 1 2 3 24 24 H 1.09000 * 109.47554 * 120.00344 * 2 1 3 25 25 H 1.09003 * 109.47204 * 240.00194 * 2 1 3 26 26 H 0.97003 * 119.99430 * 179.97438 * 8 7 5 27 27 H 0.96995 * 119.99913 * 95.00519 * 13 3 2 28 28 H 1.08001 * 120.83616 * 359.97438 * 15 14 13 29 29 H 1.07999 * 120.40105 * 180.23920 * 16 15 14 30 30 H 1.08994 * 109.47591 * 269.97956 * 19 18 17 31 31 H 1.09007 * 109.46991 * 29.98425 * 19 18 17 32 32 H 1.09004 * 109.47083 * 149.97719 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 -0.8372 5 6 3.5409 1.4446 -0.1351 6 1 4.1552 1.8151 0.6722 7 6 4.1298 0.9738 -1.2894 8 7 3.3844 0.6525 -2.3241 9 14 5.9866 0.7921 -1.3836 10 1 6.3852 -0.5201 -0.8141 11 1 6.4202 0.8686 -2.8018 12 1 6.6307 1.8837 -0.6096 13 7 1.6618 2.0941 1.2564 14 6 0.4115 2.6766 1.3857 15 6 -0.4950 2.6539 0.3234 16 6 -1.7303 3.2441 0.5033 17 7 -2.0102 3.8171 1.6657 18 6 -1.1312 3.8261 2.6472 19 6 -1.4953 4.4893 3.9505 20 7 0.0573 3.2712 2.5210 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.7988 0.3216 -3.1363 27 1 2.2869 2.1179 1.9977 28 1 -0.2375 2.1838 -0.6142 29 1 -2.4582 3.2425 -0.2945 30 1 -1.2041 5.5392 3.9178 31 1 -2.5714 4.4154 4.1076 32 1 -0.9737 3.9930 4.7690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307486261.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:22 Heat of formation + Delta-G solvation = 40.937551 kcal Electronic energy + Delta-G solvation = -14987.855522 eV Core-core repulsion = 12562.288687 eV Total energy + Delta-G solvation = -2425.566835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37157 -36.82196 -33.46822 -32.80457 -31.58496 -30.42033 -27.98510 -26.79032 -23.41231 -22.98739 -21.96310 -19.67611 -17.86275 -16.68335 -16.03958 -15.05670 -14.81813 -14.75978 -13.93893 -13.62025 -13.29708 -12.83140 -12.66161 -12.21069 -12.12337 -11.84119 -11.52592 -11.12891 -11.02543 -10.74476 -10.36070 -10.25141 -10.17074 -9.70051 -9.27515 -9.06789 -8.61383 -8.57733 -7.19622 -6.29797 -4.35604 1.64671 2.04157 3.18234 3.25234 3.27220 3.87782 4.27439 4.45456 4.61092 4.96280 5.04520 5.45964 5.71564 5.78508 5.84242 5.86949 6.04797 6.11684 6.25876 6.31377 6.33712 6.74691 6.76904 6.90165 7.01977 7.26784 7.45728 7.53759 7.61942 7.88162 8.16768 8.48595 8.69214 8.93962 9.31237 10.78372 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044986 B = 0.007278 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.266335 B = 3846.373265 C = 4150.457518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.445 3.555 15 C -0.294 4.294 16 C 0.158 3.842 17 N -0.582 5.582 18 C 0.345 3.655 19 C -0.078 4.078 20 N -0.595 5.595 21 H 0.034 0.966 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.267 0.733 27 H 0.398 0.602 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 2.305 5.155 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.307 5.307 14 C 0.198 3.802 15 C -0.323 4.323 16 C -0.001 4.001 17 N -0.304 5.304 18 C 0.075 3.925 19 C -0.137 4.137 20 N -0.323 5.323 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.232 0.768 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.585 2.526 5.538 8.967 hybrid contribution 1.528 -0.658 -0.793 1.843 sum -5.057 1.868 4.744 7.181 Atomic orbital electron populations 1.22184 0.98691 0.99570 1.00460 1.21966 0.92502 1.00012 1.02110 1.18946 0.95335 0.88758 0.80033 0.93144 1.21124 0.90225 1.43795 1.02312 0.91824 1.24863 0.98832 0.94763 0.94925 1.69926 1.35651 1.43117 1.03304 0.86449 0.84527 0.78789 0.77344 1.20305 1.21032 1.19814 1.45486 1.10914 1.55853 1.18495 1.18757 0.87097 0.85989 0.88398 1.22521 0.96840 1.10644 1.02263 1.22662 0.94140 0.89399 0.93930 1.68140 1.36033 1.24295 1.01962 1.22690 0.84583 0.90456 0.94785 1.20440 1.02211 0.99910 0.91132 1.67780 1.20696 1.18431 1.25376 0.94729 0.93814 0.92991 0.94097 0.89366 0.92357 0.76789 0.83190 0.82761 0.90371 0.90263 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.23 37.15 0.31 -2.59 16 2 C -0.13 -2.78 5.49 -26.73 -0.15 -2.93 16 3 C 0.27 6.29 2.07 -69.08 -0.14 6.15 16 4 H 0.05 1.28 6.47 -51.93 -0.34 0.94 16 5 C -0.54 -13.63 8.67 -34.44 -0.30 -13.93 16 6 H 0.06 1.60 7.73 -52.49 -0.41 1.19 16 7 C 0.07 1.80 5.19 -17.82 -0.09 1.71 16 8 N -0.88 -23.37 12.00 55.43 0.67 -22.71 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.68 -14.35 5.16 -54.90 -0.28 -14.63 16 14 C 0.44 9.01 6.54 -154.79 -1.01 8.00 16 15 C -0.29 -5.52 6.80 -39.11 -0.27 -5.79 16 16 C 0.16 2.67 11.29 -17.29 -0.20 2.48 16 17 N -0.58 -10.32 10.33 -10.81 -0.11 -10.44 16 18 C 0.34 6.07 7.64 -157.24 -1.20 4.87 16 19 C -0.08 -1.01 10.32 36.01 0.37 -0.64 16 20 N -0.60 -11.62 10.37 -9.96 -0.10 -11.73 16 21 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.04 0.84 5.38 -51.93 -0.28 0.56 16 23 H 0.05 0.96 6.38 -51.93 -0.33 0.63 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 2.13 6.65 -51.93 -0.35 1.78 16 26 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.40 8.10 8.65 -40.82 -0.35 7.75 16 28 H 0.15 2.85 4.15 -52.49 -0.22 2.64 16 29 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 263.46 15.07 3.97 3.97 Total: -1.00 -27.30 263.46 -7.50 -34.80 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -3.94 Total: 8.36 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.68 Total: -2.65 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.17 Total: -59.50 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.30 -7.50 -34.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307486261.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.743 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds