Wall clock time and date at job start Sun Mar 29 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 H 1.09007 * 109.46688 * 305.45600 * 3 2 1 5 5 C 1.50700 * 109.47329 * 185.45556 * 3 2 1 6 6 H 1.07995 * 119.99913 * 244.90282 * 5 3 2 7 7 C 1.37874 * 119.99773 * 64.90710 * 5 3 2 8 8 N 1.31512 * 120.00139 * 7.03134 * 7 5 3 9 9 Si 1.86799 * 119.99946 * 187.02902 * 7 5 3 10 10 H 1.48501 * 109.47437 * 84.98997 * 9 7 5 11 11 H 1.48496 * 109.47542 * 204.99604 * 9 7 5 12 12 H 1.48509 * 109.47222 * 324.99296 * 9 7 5 13 13 N 1.46502 * 109.47000 * 65.45437 * 3 2 1 14 14 C 1.38538 * 120.00071 * 274.99896 * 13 3 2 15 15 C 1.39667 * 120.53031 * 359.72777 * 14 13 3 16 16 C 1.38081 * 118.33409 * 179.78021 * 15 14 13 17 17 N 1.32578 * 119.19630 * 0.48934 * 16 15 14 18 18 C 1.31760 * 121.01237 * 359.74494 * 17 16 15 19 19 C 1.50703 * 119.08202 * 180.02562 * 18 17 16 20 20 N 1.31771 * 121.83642 * 0.02562 * 18 17 16 21 21 H 1.08999 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47204 * 299.99806 * 1 2 3 23 23 H 1.08996 * 109.47642 * 60.00153 * 1 2 3 24 24 H 1.09000 * 109.47554 * 120.00344 * 2 1 3 25 25 H 1.09003 * 109.47204 * 240.00194 * 2 1 3 26 26 H 0.97003 * 119.99430 * 179.97438 * 8 7 5 27 27 H 0.96995 * 119.99913 * 95.00519 * 13 3 2 28 28 H 1.08001 * 120.83616 * 359.97438 * 15 14 13 29 29 H 1.07999 * 120.40105 * 180.23920 * 16 15 14 30 30 H 1.08994 * 109.47591 * 269.97956 * 19 18 17 31 31 H 1.09007 * 109.46991 * 29.98425 * 19 18 17 32 32 H 1.09004 * 109.47083 * 149.97719 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 -0.8372 5 6 3.5409 1.4446 -0.1351 6 1 4.1552 1.8151 0.6722 7 6 4.1298 0.9738 -1.2894 8 7 3.3844 0.6525 -2.3241 9 14 5.9866 0.7921 -1.3836 10 1 6.3852 -0.5201 -0.8141 11 1 6.4202 0.8686 -2.8018 12 1 6.6307 1.8837 -0.6096 13 7 1.6618 2.0941 1.2564 14 6 0.4115 2.6766 1.3857 15 6 -0.4950 2.6539 0.3234 16 6 -1.7303 3.2441 0.5033 17 7 -2.0102 3.8171 1.6657 18 6 -1.1312 3.8261 2.6472 19 6 -1.4953 4.4893 3.9505 20 7 0.0573 3.2712 2.5210 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.7988 0.3216 -3.1363 27 1 2.2869 2.1179 1.9977 28 1 -0.2375 2.1838 -0.6142 29 1 -2.4582 3.2425 -0.2945 30 1 -1.2041 5.5392 3.9178 31 1 -2.5714 4.4154 4.1076 32 1 -0.9737 3.9930 4.7690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307486261.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:21 Heat of formation + Delta-G solvation = 24.595705 kcal Electronic energy + Delta-G solvation = -14988.564158 eV Core-core repulsion = 12562.288687 eV Total energy + Delta-G solvation = -2426.275470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.81059 -38.47125 -35.16165 -34.28510 -33.21539 -31.98503 -29.29063 -28.53707 -25.16560 -24.43962 -23.47222 -21.34743 -19.52394 -18.18351 -17.78407 -16.80780 -16.30481 -16.26593 -15.53272 -15.11988 -14.79792 -14.47302 -14.01994 -13.64882 -13.33967 -13.29404 -13.11863 -12.89925 -12.72038 -12.37823 -12.14763 -11.84602 -11.83517 -11.31697 -11.06828 -10.64639 -10.41654 -10.05592 -8.78279 -8.24985 -6.36831 0.25552 0.57181 1.41982 1.43649 1.52018 2.25547 2.48295 3.03396 3.08428 3.36227 3.62558 4.00302 4.29555 4.45278 4.52403 4.60240 4.70076 4.71648 4.81833 4.89730 5.04268 5.13497 5.19876 5.28055 5.40417 5.56487 5.68239 5.76289 5.91860 6.06243 6.53433 6.70408 6.93609 7.31981 7.48927 8.82565 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044986 B = 0.007278 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.266335 B = 3846.373265 C = 4150.457518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.283 3.717 4 H 0.026 0.974 5 C -0.555 4.555 6 H 0.060 0.940 7 C 0.028 3.972 8 N -0.908 5.908 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.689 5.689 14 C 0.429 3.571 15 C -0.308 4.308 16 C 0.167 3.833 17 N -0.585 5.585 18 C 0.334 3.666 19 C -0.075 4.075 20 N -0.609 5.609 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.268 0.732 27 H 0.398 0.602 28 H 0.144 0.856 29 H 0.192 0.808 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 2.710 5.801 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.043 0.957 5 C -0.593 4.593 6 H 0.078 0.922 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.786 3.214 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.315 5.315 14 C 0.183 3.817 15 C -0.336 4.336 16 C 0.007 3.993 17 N -0.307 5.307 18 C 0.065 3.935 19 C -0.133 4.133 20 N -0.337 5.337 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.232 0.768 28 H 0.161 0.839 29 H 0.209 0.791 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.406 2.947 6.209 10.104 hybrid contribution 1.686 -0.713 -0.958 2.066 sum -5.719 2.234 5.252 8.080 Atomic orbital electron populations 1.22033 0.96307 1.00699 1.00518 1.21799 0.94583 0.98837 1.00613 1.18615 0.94090 0.89172 0.80180 0.95663 1.21446 0.91632 1.43838 1.02369 0.92186 1.25571 1.02691 0.94492 0.94640 1.70019 1.37135 1.43693 1.03666 0.85523 0.79836 0.78746 0.77255 1.19773 1.20764 1.19674 1.45230 1.11676 1.56878 1.17751 1.18957 0.86955 0.86436 0.89358 1.22540 0.97585 1.11792 1.01720 1.23248 0.93940 0.87542 0.94528 1.68293 1.35928 1.24230 1.02215 1.23634 0.83855 0.89686 0.96337 1.20595 1.03503 1.00356 0.88896 1.67841 1.21787 1.18898 1.25171 0.92996 0.94004 0.92608 0.94489 0.91747 0.92288 0.76795 0.83857 0.79138 0.88751 0.88430 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.23 71.98 0.59 -4.60 16 2 C -0.12 -5.28 5.49 30.59 0.17 -5.11 16 3 C 0.28 13.37 2.07 44.24 0.09 13.46 16 4 H 0.03 1.33 6.47 -2.38 -0.02 1.31 16 5 C -0.55 -28.63 8.67 25.60 0.22 -28.40 16 6 H 0.06 3.06 7.73 -2.91 -0.02 3.04 16 7 C 0.03 1.42 5.19 84.65 0.44 1.86 16 8 N -0.91 -48.65 12.00 21.45 0.26 -48.39 16 9 Si 0.96 41.18 29.54 68.60 2.03 43.21 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 N -0.69 -29.36 5.16 -327.61 -1.69 -31.05 16 14 C 0.43 17.27 6.54 133.18 0.87 18.14 16 15 C -0.31 -11.35 6.80 22.58 0.15 -11.20 16 16 C 0.17 5.31 11.29 84.54 0.95 6.26 16 17 N -0.59 -19.36 10.33 -188.12 -1.94 -21.30 16 18 C 0.33 11.10 7.64 138.77 1.06 12.17 16 19 C -0.08 -1.73 10.32 71.24 0.73 -0.99 16 20 N -0.61 -23.21 10.37 -185.43 -1.92 -25.14 16 21 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.04 1.58 5.38 -2.39 -0.01 1.56 16 23 H 0.06 2.03 6.38 -2.39 -0.02 2.01 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 3.16 6.65 -2.39 -0.02 3.15 16 26 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 27 H 0.40 16.50 8.65 -92.71 -0.80 15.70 16 28 H 0.14 5.46 4.15 -2.91 -0.01 5.45 16 29 H 0.19 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -57.61 263.46 2.35 -55.26 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.33 Total: 25.83 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.29 Total: 1.58 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -5.30 Total: -125.88 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -57.61 2.35 -55.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307486261.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.855 kcal (2) G-P(sol) polarization free energy of solvation -57.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds