Wall clock time and date at job start Sun Mar 29 2020 22:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 H 1.09000 * 109.46856 * 305.74089 * 3 2 1 5 5 C 1.50699 * 109.47063 * 185.73721 * 3 2 1 6 6 H 1.07997 * 120.00083 * 335.22124 * 5 3 2 7 7 C 1.37877 * 119.99587 * 155.21729 * 5 3 2 8 8 N 1.31517 * 120.00434 * 355.34009 * 7 5 3 9 9 Si 1.86798 * 119.99860 * 175.34352 * 7 5 3 10 10 H 1.48505 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47474 * 119.99663 * 9 7 5 12 12 H 1.48502 * 109.47226 * 240.00058 * 9 7 5 13 13 N 1.46507 * 109.46988 * 65.73683 * 3 2 1 14 14 C 1.38400 * 120.00340 * 275.00012 * 13 3 2 15 15 N 1.32515 * 119.21676 * 359.73118 * 14 13 3 16 16 C 1.32255 * 120.73935 * 179.71892 * 15 14 13 17 17 C 1.38630 * 119.19644 * 0.54389 * 16 15 14 18 18 C 1.38580 * 118.55537 * 359.72926 * 17 16 15 19 19 C 1.50709 * 120.39566 * 179.97438 * 18 17 16 20 20 N 1.32286 * 119.20284 * 0.02562 * 18 17 16 21 21 H 1.08998 * 109.47239 * 59.99571 * 1 2 3 22 22 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46806 * 299.99929 * 1 2 3 24 24 H 1.09001 * 109.46806 * 240.00071 * 2 1 3 25 25 H 1.09003 * 109.47106 * 119.99959 * 2 1 3 26 26 H 0.96996 * 119.99613 * 5.27670 * 8 7 5 27 27 H 0.97002 * 119.99565 * 95.00342 * 13 3 2 28 28 H 1.07997 * 120.40380 * 180.29895 * 16 15 14 29 29 H 1.08005 * 120.71754 * 179.75315 * 17 16 15 30 30 H 1.08994 * 109.47142 * 270.01954 * 19 18 17 31 31 H 1.08993 * 109.47367 * 30.03015 * 19 18 17 32 32 H 1.09006 * 109.46314 * 150.02763 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5952 1.9851 -0.8341 5 6 3.5403 1.4448 -0.1420 6 1 4.1135 0.5839 0.1688 7 6 4.1811 2.5461 -0.6689 8 7 3.4785 3.5568 -1.1320 9 14 6.0474 2.6026 -0.7251 10 1 6.5982 1.3504 -0.1471 11 1 6.4965 2.7359 -2.1343 12 1 6.5314 3.7659 0.0609 13 7 1.6677 2.0921 1.2593 14 6 0.4192 2.6737 1.3952 15 7 -0.4253 2.6387 0.3746 16 6 -1.6278 3.1802 0.4734 17 6 -1.9957 3.7988 1.6583 18 6 -1.0861 3.8221 2.7035 19 6 -1.4425 4.4839 4.0098 20 7 0.0989 3.2573 2.5406 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.5135 3.5619 -1.0337 27 1 2.2963 2.1146 1.9977 28 1 -2.3135 3.1443 -0.3602 29 1 -2.9701 4.2524 1.7644 30 1 -1.1514 5.5338 3.9765 31 1 -2.5175 4.4099 4.1733 32 1 -0.9159 3.9867 4.8245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307585370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:49 Heat of formation + Delta-G solvation = 40.336695 kcal Electronic energy + Delta-G solvation = -15127.454161 eV Core-core repulsion = 12701.861272 eV Total energy + Delta-G solvation = -2425.592890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27003 -36.44584 -33.62010 -32.83431 -31.93221 -29.88133 -27.96099 -26.39706 -23.15738 -22.97399 -21.83149 -19.88406 -17.74101 -16.61478 -16.30407 -15.03587 -14.84063 -14.08027 -13.84864 -13.73141 -13.38681 -12.98242 -12.71471 -12.42655 -12.27083 -12.05253 -11.07242 -10.82578 -10.79347 -10.56343 -10.29159 -10.21093 -10.00162 -9.79450 -9.24919 -8.87840 -8.51159 -8.32452 -7.00576 -6.56108 -4.37565 1.80992 1.91704 3.35785 3.37464 3.52833 3.91725 4.38924 4.59428 4.77398 5.00107 5.21383 5.51258 5.67334 5.70097 5.76235 5.86192 6.01169 6.05644 6.11475 6.25401 6.34895 6.68055 6.84416 6.86408 6.97242 7.12458 7.35016 7.73302 7.79954 8.14344 8.28621 8.58448 8.72917 9.24995 9.43701 10.80873 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.008660 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.713008 B = 3232.526408 C = 3648.760185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.250 3.750 4 H 0.060 0.940 5 C -0.607 4.607 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.887 5.887 9 Si 1.075 2.925 10 H -0.286 1.286 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.664 5.664 14 C 0.565 3.435 15 N -0.561 5.561 16 C 0.187 3.813 17 C -0.327 4.327 18 C 0.211 3.789 19 C -0.101 4.101 20 N -0.590 5.590 21 H 0.057 0.943 22 H 0.026 0.974 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.278 0.722 27 H 0.398 0.602 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 -0.383 5.412 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.150 3.850 4 H 0.078 0.922 5 C -0.646 4.646 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.521 5.521 9 Si 0.902 3.098 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.295 5.295 14 C 0.209 3.791 15 N -0.285 5.285 16 C 0.017 3.983 17 C -0.354 4.354 18 C 0.061 3.939 19 C -0.159 4.159 20 N -0.316 5.316 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.171 0.829 29 H 0.146 0.854 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.379 -0.050 4.560 7.842 hybrid contribution -1.990 -0.427 0.935 2.240 sum -8.369 -0.476 5.496 10.023 Atomic orbital electron populations 1.21826 0.97233 0.98281 1.01917 1.21832 0.94185 0.99249 1.00391 1.19008 0.94909 0.88519 0.82589 0.92170 1.22204 0.91164 1.04197 1.47033 0.92421 1.26041 1.07304 0.92440 0.91968 1.70690 1.09813 1.32333 1.39239 0.83472 0.73683 0.75693 0.76923 1.21215 1.21040 1.21208 1.46750 1.08881 1.55242 1.18673 1.19963 0.88434 0.86632 0.84090 1.68202 1.04398 1.24948 1.30987 1.22798 0.91710 0.88049 0.95706 1.22022 1.03062 1.13087 0.97264 1.21228 0.88061 0.89540 0.95088 1.20694 1.01545 1.00380 0.93250 1.67831 1.20399 1.17998 1.25375 0.92385 0.95501 0.93893 0.92225 0.93870 0.91015 0.76578 0.82864 0.85373 0.90367 0.90803 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.45 37.16 0.31 -2.37 16 2 C -0.12 -2.57 5.58 -26.73 -0.15 -2.72 16 3 C 0.25 6.19 1.95 -69.08 -0.13 6.06 16 4 H 0.06 1.66 6.04 -51.93 -0.31 1.35 16 5 C -0.61 -16.27 8.50 -34.44 -0.29 -16.56 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.03 0.88 5.45 -17.82 -0.10 0.78 16 8 N -0.89 -26.26 13.62 55.43 0.76 -25.51 16 9 Si 1.07 24.34 29.91 -169.99 -5.08 19.26 16 10 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 13 N -0.66 -15.67 5.16 -56.92 -0.29 -15.97 16 14 C 0.57 12.68 7.02 -322.81 -2.26 10.41 16 15 N -0.56 -11.86 6.39 -13.93 -0.09 -11.95 16 16 C 0.19 3.21 11.30 -17.22 -0.19 3.02 16 17 C -0.33 -5.08 9.85 -39.31 -0.39 -5.47 16 18 C 0.21 3.60 6.82 -82.27 -0.56 3.04 16 19 C -0.10 -1.24 10.22 36.01 0.37 -0.88 16 20 N -0.59 -12.28 10.40 -10.16 -0.11 -12.39 16 21 H 0.06 1.16 7.70 -51.93 -0.40 0.76 16 22 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.04 0.89 5.58 -51.93 -0.29 0.60 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.28 8.43 6.66 -40.82 -0.27 8.15 16 27 H 0.40 9.31 8.71 -40.82 -0.36 8.95 16 28 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 269.36 15.07 4.06 4.06 Total: -1.00 -30.17 269.36 -8.37 -38.54 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.22 Total: 8.64 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.40 Total: -4.68 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.27 Total: -65.82 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.17 -8.37 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307585370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.877 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds