Wall clock time and date at job start Sun Mar 29 2020 22:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 H 1.09000 * 109.46856 * 305.74089 * 3 2 1 5 5 C 1.50699 * 109.47063 * 185.73721 * 3 2 1 6 6 H 1.07997 * 120.00083 * 335.22124 * 5 3 2 7 7 C 1.37877 * 119.99587 * 155.21729 * 5 3 2 8 8 N 1.31517 * 120.00434 * 355.34009 * 7 5 3 9 9 Si 1.86798 * 119.99860 * 175.34352 * 7 5 3 10 10 H 1.48505 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47474 * 119.99663 * 9 7 5 12 12 H 1.48502 * 109.47226 * 240.00058 * 9 7 5 13 13 N 1.46507 * 109.46988 * 65.73683 * 3 2 1 14 14 C 1.38400 * 120.00340 * 275.00012 * 13 3 2 15 15 N 1.32515 * 119.21676 * 359.73118 * 14 13 3 16 16 C 1.32255 * 120.73935 * 179.71892 * 15 14 13 17 17 C 1.38630 * 119.19644 * 0.54389 * 16 15 14 18 18 C 1.38580 * 118.55537 * 359.72926 * 17 16 15 19 19 C 1.50709 * 120.39566 * 179.97438 * 18 17 16 20 20 N 1.32286 * 119.20284 * 0.02562 * 18 17 16 21 21 H 1.08998 * 109.47239 * 59.99571 * 1 2 3 22 22 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46806 * 299.99929 * 1 2 3 24 24 H 1.09001 * 109.46806 * 240.00071 * 2 1 3 25 25 H 1.09003 * 109.47106 * 119.99959 * 2 1 3 26 26 H 0.96996 * 119.99613 * 5.27670 * 8 7 5 27 27 H 0.97002 * 119.99565 * 95.00342 * 13 3 2 28 28 H 1.07997 * 120.40380 * 180.29895 * 16 15 14 29 29 H 1.08005 * 120.71754 * 179.75315 * 17 16 15 30 30 H 1.08994 * 109.47142 * 270.01954 * 19 18 17 31 31 H 1.08993 * 109.47367 * 30.03015 * 19 18 17 32 32 H 1.09006 * 109.46314 * 150.02763 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5952 1.9851 -0.8341 5 6 3.5403 1.4448 -0.1420 6 1 4.1135 0.5839 0.1688 7 6 4.1811 2.5461 -0.6689 8 7 3.4785 3.5568 -1.1320 9 14 6.0474 2.6026 -0.7251 10 1 6.5982 1.3504 -0.1471 11 1 6.4965 2.7359 -2.1343 12 1 6.5314 3.7659 0.0609 13 7 1.6677 2.0921 1.2593 14 6 0.4192 2.6737 1.3952 15 7 -0.4253 2.6387 0.3746 16 6 -1.6278 3.1802 0.4734 17 6 -1.9957 3.7988 1.6583 18 6 -1.0861 3.8221 2.7035 19 6 -1.4425 4.4839 4.0098 20 7 0.0989 3.2573 2.5406 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.5135 3.5619 -1.0337 27 1 2.2963 2.1146 1.9977 28 1 -2.3135 3.1443 -0.3602 29 1 -2.9701 4.2524 1.7644 30 1 -1.1514 5.5338 3.9765 31 1 -2.5175 4.4099 4.1733 32 1 -0.9159 3.9867 4.8245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307585370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:49 Heat of formation + Delta-G solvation = 22.361551 kcal Electronic energy + Delta-G solvation = -15128.233622 eV Core-core repulsion = 12701.861272 eV Total energy + Delta-G solvation = -2426.372350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.74662 -38.20539 -35.09921 -34.58981 -33.68139 -31.43455 -29.21208 -28.25500 -25.10027 -24.38310 -23.33634 -21.64105 -19.51940 -18.37235 -17.85640 -16.52977 -16.24927 -15.76411 -15.65275 -15.35324 -14.87946 -14.61336 -14.22456 -13.85257 -13.70901 -13.05832 -12.86642 -12.63358 -12.55003 -12.29726 -11.93635 -11.82021 -11.56777 -11.30772 -11.00804 -10.73341 -10.51809 -9.84168 -8.74664 -8.62911 -6.54119 0.43560 0.48282 1.52327 1.58494 1.77315 2.27996 2.51860 3.12770 3.21427 3.45816 3.81903 4.04603 4.30320 4.35051 4.48207 4.52047 4.61008 4.73478 4.78697 4.93090 5.00138 5.09814 5.14142 5.21146 5.27218 5.49791 5.72124 5.80010 6.10229 6.25091 6.46226 6.50574 6.96025 7.35540 7.66450 8.63230 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.008660 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.713008 B = 3232.526408 C = 3648.760185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.113 4.113 3 C 0.260 3.740 4 H 0.026 0.974 5 C -0.616 4.616 6 H 0.056 0.944 7 C -0.016 4.016 8 N -0.919 5.919 9 Si 1.122 2.878 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.546 3.454 15 N -0.589 5.589 16 C 0.170 3.830 17 C -0.304 4.304 18 C 0.190 3.810 19 C -0.096 4.096 20 N -0.614 5.614 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.031 0.969 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.260 0.740 27 H 0.394 0.606 28 H 0.189 0.811 29 H 0.175 0.825 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -0.236 6.305 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C 0.158 3.842 4 H 0.044 0.956 5 C -0.654 4.654 6 H 0.075 0.925 7 C -0.218 4.218 8 N -0.554 5.554 9 Si 0.943 3.057 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.313 5.313 14 C 0.190 3.810 15 N -0.314 5.314 16 C 0.003 3.997 17 C -0.331 4.331 18 C 0.043 3.957 19 C -0.153 4.153 20 N -0.341 5.341 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.229 0.771 28 H 0.206 0.794 29 H 0.192 0.808 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.922 0.108 5.471 9.628 hybrid contribution -1.752 -0.429 0.733 1.947 sum -9.674 -0.320 6.204 11.497 Atomic orbital electron populations 1.21641 0.95446 0.99561 1.00973 1.21758 0.95762 0.97409 1.00320 1.18705 0.93714 0.89603 0.82153 0.95566 1.22498 0.92512 1.03959 1.46477 0.92535 1.27424 1.11139 0.92000 0.91252 1.70826 1.08797 1.33759 1.41999 0.82879 0.68927 0.76518 0.77327 1.19119 1.20364 1.20963 1.46088 1.10046 1.57223 1.17898 1.19946 0.88291 0.87572 0.85233 1.68180 1.05875 1.26317 1.31046 1.23538 0.90921 0.87532 0.97715 1.22538 1.04307 1.10557 0.95657 1.22159 0.87088 0.88942 0.97555 1.20821 1.03766 1.00292 0.90419 1.67834 1.22535 1.18752 1.24930 0.93077 0.92917 0.95016 0.92313 0.93685 0.92934 0.77091 0.79385 0.80757 0.89143 0.87233 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.45 71.98 0.61 -4.06 16 2 C -0.11 -5.01 5.58 30.60 0.17 -4.84 16 3 C 0.26 13.31 1.95 44.24 0.09 13.40 16 4 H 0.03 1.53 6.04 -2.39 -0.01 1.51 16 5 C -0.62 -33.81 8.50 25.60 0.22 -33.59 16 6 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 7 C -0.02 -0.90 5.45 84.65 0.46 -0.44 16 8 N -0.92 -56.18 13.62 21.45 0.29 -55.89 16 9 Si 1.12 49.40 29.91 68.60 2.05 51.45 16 10 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.68 -33.21 5.16 -334.00 -1.72 -34.93 16 14 C 0.55 24.90 7.02 261.49 1.83 26.73 16 15 N -0.59 -24.99 6.39 -197.98 -1.27 -26.26 16 16 C 0.17 5.52 11.30 84.72 0.96 6.47 16 17 C -0.30 -8.45 9.85 22.45 0.22 -8.23 16 18 C 0.19 6.08 6.82 42.57 0.29 6.37 16 19 C -0.10 -2.04 10.22 71.24 0.73 -1.31 16 20 N -0.61 -25.44 10.40 -186.04 -1.93 -27.38 16 21 H 0.05 2.05 7.70 -2.39 -0.02 2.03 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.03 1.30 5.58 -2.39 -0.01 1.29 16 24 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.26 16.54 6.66 -92.71 -0.62 15.93 16 27 H 0.39 19.25 8.71 -92.71 -0.81 18.45 16 28 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.11 1.55 8.09 -2.39 -0.02 1.53 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -67.85 269.36 3.46 -64.39 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.46 Total: 28.09 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.58 Total: 0.52 kcal Atomic # 7 Polarization: -139.82 SS G_CDS: -4.63 Total: -144.45 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Total: -67.85 3.46 -64.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307585370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.756 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds