Wall clock time and date at job start Sun Mar 29 2020 22:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47299 * 89.99452 * 9 7 5 11 11 H 1.48495 * 109.47254 * 209.99850 * 9 7 5 12 12 H 1.48505 * 109.47246 * 330.00221 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.38403 * 119.99857 * 84.72336 * 13 3 2 15 15 N 1.32508 * 119.22025 * 359.73023 * 14 13 3 16 16 C 1.32266 * 120.73677 * 179.71417 * 15 14 13 17 17 C 1.38619 * 119.19846 * 0.55117 * 16 15 14 18 18 C 1.38585 * 118.55866 * 359.73063 * 17 16 15 19 19 C 1.50705 * 120.40117 * 179.97438 * 18 17 16 20 20 N 1.32288 * 119.19686 * 359.97438 * 18 17 16 21 21 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 22 22 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 23 23 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 25 25 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 26 26 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 27 27 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 28 28 H 1.08000 * 120.39900 * 180.25038 * 16 15 14 29 29 H 1.08000 * 120.72328 * 179.69994 * 17 16 15 30 30 H 1.08998 * 109.46574 * 270.01810 * 19 18 17 31 31 H 1.08997 * 109.46993 * 30.01790 * 19 18 17 32 32 H 1.08998 * 109.46995 * 150.01999 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3112 2.1545 12 1 6.6132 0.8394 0.0270 13 7 1.6525 2.0975 -1.2518 14 6 0.4003 2.6747 -1.3720 15 7 -0.4377 2.6211 -0.3469 16 6 -1.6395 3.1677 -0.4270 17 6 -2.0217 3.7913 -1.6046 18 6 -1.1228 3.8241 -2.6589 19 6 -1.4952 4.4906 -3.9582 20 7 0.0662 3.2632 -2.5109 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8292 -0.0605 2.9502 27 1 2.2720 2.1231 -1.9978 28 1 -2.3166 3.1243 0.4132 29 1 -2.9989 4.2413 -1.6986 30 1 -1.9619 3.7610 -4.6200 31 1 -2.1948 5.3032 -3.7622 32 1 -0.5984 4.8896 -4.4320 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307585371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:53 Heat of formation + Delta-G solvation = 32.172690 kcal Electronic energy + Delta-G solvation = -14993.279289 eV Core-core repulsion = 12567.332382 eV Total energy + Delta-G solvation = -2425.946908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74652 -38.07088 -35.10436 -34.70711 -33.22250 -31.52246 -29.23163 -28.52802 -25.09001 -24.36679 -23.26382 -21.36367 -19.46669 -17.99118 -17.75350 -16.74507 -16.36234 -16.21902 -15.49579 -15.06622 -14.63077 -14.49333 -13.90337 -13.66486 -13.40866 -13.17237 -13.03109 -12.84659 -12.70395 -12.25971 -12.09209 -11.66746 -11.53017 -11.30761 -11.09147 -10.85598 -10.45972 -9.80176 -8.68484 -8.17112 -6.33259 0.45731 0.48469 1.42779 1.43063 1.53766 2.24367 2.47887 3.10385 3.15390 3.47499 3.84054 4.04051 4.50610 4.53828 4.58654 4.59993 4.75236 4.80676 4.83900 5.00486 5.12154 5.18610 5.28298 5.47523 5.54176 5.60484 5.82732 5.85374 6.08771 6.24290 6.44326 6.77224 6.94779 7.34977 7.68739 8.87982 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044957 B = 0.007356 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.673161 B = 3805.566439 C = 4134.727929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.017 0.983 5 C -0.555 4.555 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.268 1.268 13 N -0.685 5.685 14 C 0.551 3.449 15 N -0.589 5.589 16 C 0.171 3.829 17 C -0.299 4.299 18 C 0.192 3.808 19 C -0.096 4.096 20 N -0.608 5.608 21 H 0.047 0.953 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.025 0.975 25 H 0.075 0.925 26 H 0.266 0.734 27 H 0.402 0.598 28 H 0.189 0.811 29 H 0.176 0.824 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 5.665 -7.572 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.035 0.965 5 C -0.593 4.593 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.192 1.192 13 N -0.317 5.317 14 C 0.194 3.806 15 N -0.313 5.313 16 C 0.004 3.996 17 C -0.325 4.325 18 C 0.045 3.955 19 C -0.153 4.153 20 N -0.334 5.334 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.238 0.762 28 H 0.205 0.795 29 H 0.194 0.806 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.307 5.034 -7.112 12.749 hybrid contribution 0.544 0.133 0.061 0.564 sum -8.762 5.167 -7.052 12.377 Atomic orbital electron populations 1.21614 0.96454 0.98556 1.00385 1.21795 0.94386 0.99205 1.00605 1.18378 0.93026 0.88948 0.80363 0.96500 1.21571 0.91882 1.39201 1.06644 0.92198 1.25657 1.03080 0.94246 0.94918 1.70010 1.36871 1.38153 1.09707 0.85426 0.79384 0.77667 0.78337 1.20255 1.20445 1.19205 1.44866 1.11014 1.57853 1.17940 1.19638 0.87812 0.87670 0.85460 1.68236 1.06314 1.25598 1.31175 1.23543 0.90766 0.87318 0.97977 1.22573 1.04199 1.10291 0.95441 1.22146 0.87011 0.88942 0.97434 1.20829 1.02914 1.00772 0.90818 1.67794 1.22334 1.18595 1.24639 0.93391 0.95098 0.94339 0.95631 0.90641 0.92436 0.76224 0.79461 0.80640 0.88731 0.87431 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 8.42 71.98 0.61 -4.38 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.92 16 3 C 0.30 15.61 2.24 44.24 0.10 15.71 16 4 H 0.02 1.02 7.52 -2.38 -0.02 1.00 16 5 C -0.55 -30.69 8.73 25.60 0.22 -30.46 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -51.84 11.29 21.45 0.24 -51.60 16 9 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.68 -32.03 5.16 -334.01 -1.72 -33.76 16 14 C 0.55 23.83 7.00 261.49 1.83 25.66 16 15 N -0.59 -24.24 6.31 -197.98 -1.25 -25.49 16 16 C 0.17 5.25 11.30 84.72 0.96 6.21 16 17 C -0.30 -7.59 9.85 22.44 0.22 -7.37 16 18 C 0.19 5.59 6.82 42.57 0.29 5.88 16 19 C -0.10 -1.78 10.22 71.24 0.73 -1.06 16 20 N -0.61 -23.19 10.40 -186.04 -1.93 -25.12 16 21 H 0.05 2.17 7.64 -2.39 -0.02 2.15 16 22 H 0.03 1.35 5.56 -2.38 -0.01 1.33 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 4.18 5.95 -2.39 -0.01 4.17 16 26 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.40 18.00 8.65 -92.70 -0.80 17.19 16 28 H 0.19 4.29 8.06 -2.91 -0.02 4.26 16 29 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.31 8.09 -2.39 -0.02 1.29 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.31 267.48 3.25 -62.06 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.32 Total: 22.83 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.57 Total: 5.90 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -4.66 Total: -135.96 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -65.31 3.25 -62.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307585371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.230 kcal (2) G-P(sol) polarization free energy of solvation -65.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds