Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99563 * 2 1 4 4 H 1.48509 * 109.47348 * 240.00056 * 3 2 1 5 5 H 1.48493 * 109.47786 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46899 * 120.00349 * 3 2 1 7 7 C 1.37872 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47136 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00059 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47055 * 180.02562 * 12 11 10 14 14 C 1.38289 * 119.96926 * 270.02209 * 13 12 11 15 15 C 1.38240 * 120.11036 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.05812 * 359.67646 * 15 14 13 17 17 C 1.38709 * 119.93675 * 0.57760 * 16 15 14 18 18 O 1.35905 * 120.05346 * 179.72475 * 17 16 15 19 19 C 1.38116 * 119.97322 * 90.00238 * 13 12 11 20 20 H 0.96999 * 120.00230 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47121 * 60.00356 * 9 7 2 22 22 H 1.09006 * 109.47165 * 299.99988 * 9 7 2 23 23 H 1.09000 * 109.47186 * 59.99953 * 10 9 7 24 24 H 1.08998 * 109.47454 * 300.00191 * 10 9 7 25 25 H 1.00902 * 111.00454 * 303.95484 * 11 10 9 26 26 H 1.09002 * 109.47307 * 60.00138 * 12 11 10 27 27 H 1.09000 * 109.47236 * 299.99834 * 12 11 10 28 28 H 1.08001 * 119.94341 * 0.02562 * 14 13 12 29 29 H 1.08006 * 119.97312 * 179.97438 * 15 14 13 30 30 H 1.07996 * 120.03009 * 180.29712 * 16 15 14 31 31 H 0.96705 * 113.99576 * 269.72355 * 18 17 16 32 32 H 1.08003 * 120.03068 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 2.4354 -6.0758 -0.0005 13 6 1.6473 -7.3604 -0.0005 14 6 1.2861 -7.9492 1.1975 15 6 0.5637 -9.1279 1.2009 16 6 0.1949 -9.7170 0.0068 17 6 0.5606 -9.1311 -1.1962 18 8 0.2039 -9.7116 -2.3721 19 6 1.2861 -7.9483 -1.1969 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.8747 -4.9842 0.7817 26 1 3.0640 -6.0348 0.8890 27 1 3.0627 -6.0349 -0.8910 28 1 1.5690 -7.4875 2.1320 29 1 0.2832 -9.5861 2.1379 30 1 -0.3735 -10.6353 0.0100 31 1 0.8538 -10.3415 -2.7128 32 1 1.5685 -7.4881 -2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308507635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = -31.295982 kcal Electronic energy + Delta-G solvation = -13919.575917 eV Core-core repulsion = 11458.584050 eV Total energy + Delta-G solvation = -2460.991867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78961 -37.18550 -35.62051 -33.10142 -31.49689 -29.90454 -28.82578 -25.46655 -23.37032 -22.61598 -21.23702 -20.52470 -18.04335 -16.48222 -16.28952 -15.95799 -15.31673 -14.81078 -14.42654 -14.17070 -13.73514 -13.48236 -12.53702 -12.45863 -12.31509 -11.97112 -11.56751 -11.54460 -11.02667 -10.91317 -10.60883 -10.44645 -9.99287 -9.42907 -9.18708 -8.85249 -8.64390 -8.34114 -7.83098 -5.98442 -4.01494 1.20025 1.31171 3.34218 3.38635 3.40804 3.58018 4.10575 4.45419 4.76319 4.83641 5.02215 5.12087 5.31197 5.37285 5.38801 5.57986 5.74557 5.91644 5.98394 6.30281 6.34549 6.37175 6.39009 6.60310 6.77898 6.96938 7.44931 7.57069 7.72622 7.81708 7.94300 8.09032 8.43805 9.05564 9.62220 11.12960 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057108 B = 0.004310 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.177444 B = 6495.314516 C = 6601.110182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.094 3.906 13 C -0.057 4.057 14 C -0.124 4.124 15 C -0.106 4.106 16 C -0.151 4.151 17 C 0.100 3.900 18 O -0.500 6.500 19 C -0.123 4.123 20 H 0.261 0.739 21 H 0.026 0.974 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.059 0.941 25 H 0.338 0.662 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.387 0.613 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -19.236 0.697 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.317 5.317 12 C -0.035 4.035 13 C -0.057 4.057 14 C -0.143 4.143 15 C -0.124 4.124 16 C -0.170 4.170 17 C 0.055 3.945 18 O -0.309 6.309 19 C -0.142 4.142 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.155 0.845 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.242 0.758 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.792 -18.751 0.064 18.958 hybrid contribution 1.103 0.668 0.841 1.539 sum 3.895 -18.083 0.905 18.520 Atomic orbital electron populations 1.69964 1.06049 1.26728 1.50475 1.25001 0.94838 0.99213 0.95270 0.86640 0.79553 0.83095 0.78581 1.20209 1.21255 1.20300 1.21134 0.92937 0.91005 1.51121 0.92792 1.19071 0.94023 0.90353 0.97799 1.22196 0.97042 0.88283 0.98727 1.60631 1.19484 1.01597 1.49998 1.20919 0.93667 0.87876 1.01062 1.19831 0.97609 0.95783 0.92498 1.21125 0.99320 0.95997 0.97812 1.20972 0.98065 0.95787 0.97566 1.21361 1.02324 1.01233 0.92079 1.18482 0.97301 0.93552 0.85126 1.84853 1.48230 1.61331 1.36509 1.21339 0.98383 0.95630 0.98830 0.92910 0.95589 0.96788 0.96554 0.92235 0.84457 0.94714 0.90450 0.85935 0.85764 0.85779 0.75800 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.39 5.62 -3.83 -0.02 1.37 16 11 N -0.69 -12.59 6.49 -115.06 -0.75 -13.33 16 12 C 0.09 1.38 5.81 -4.97 -0.03 1.35 16 13 C -0.06 -0.77 5.39 -104.64 -0.56 -1.33 16 14 C -0.12 -1.49 9.70 -39.56 -0.38 -1.87 16 15 C -0.11 -1.14 10.04 -39.60 -0.40 -1.54 16 16 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 17 C 0.10 1.23 6.70 -39.22 -0.26 0.96 16 18 O -0.50 -5.50 13.50 -19.44 -0.26 -5.77 16 19 C -0.12 -1.64 9.64 -39.43 -0.38 -2.02 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.34 6.07 8.72 -39.29 -0.34 5.73 16 26 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.39 2.19 9.06 45.56 0.41 2.61 16 32 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 281.64 15.07 4.24 4.24 Total: -1.00 -32.30 281.64 -7.73 -40.04 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.69 Total: 2.91 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -2.99 Total: -18.37 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.01 Total: -39.85 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.26 Total: -5.77 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.30 -7.73 -40.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308507635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.741 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds