Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99563 * 2 1 4 4 H 1.48509 * 109.47348 * 240.00056 * 3 2 1 5 5 H 1.48493 * 109.47786 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46899 * 120.00349 * 3 2 1 7 7 C 1.37872 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47136 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00059 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47055 * 180.02562 * 12 11 10 14 14 C 1.38289 * 119.96926 * 270.02209 * 13 12 11 15 15 C 1.38240 * 120.11036 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.05812 * 359.67646 * 15 14 13 17 17 C 1.38709 * 119.93675 * 0.57760 * 16 15 14 18 18 O 1.35905 * 120.05346 * 179.72475 * 17 16 15 19 19 C 1.38116 * 119.97322 * 90.00238 * 13 12 11 20 20 H 0.96999 * 120.00230 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47121 * 60.00356 * 9 7 2 22 22 H 1.09006 * 109.47165 * 299.99988 * 9 7 2 23 23 H 1.09000 * 109.47186 * 59.99953 * 10 9 7 24 24 H 1.08998 * 109.47454 * 300.00191 * 10 9 7 25 25 H 1.00902 * 111.00454 * 303.95484 * 11 10 9 26 26 H 1.09002 * 109.47307 * 60.00138 * 12 11 10 27 27 H 1.09000 * 109.47236 * 299.99834 * 12 11 10 28 28 H 1.08001 * 119.94341 * 0.02562 * 14 13 12 29 29 H 1.08006 * 119.97312 * 179.97438 * 15 14 13 30 30 H 1.07996 * 120.03009 * 180.29712 * 16 15 14 31 31 H 0.96705 * 113.99576 * 269.72355 * 18 17 16 32 32 H 1.08003 * 120.03068 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 2.4354 -6.0758 -0.0005 13 6 1.6473 -7.3604 -0.0005 14 6 1.2861 -7.9492 1.1975 15 6 0.5637 -9.1279 1.2009 16 6 0.1949 -9.7170 0.0068 17 6 0.5606 -9.1311 -1.1962 18 8 0.2039 -9.7116 -2.3721 19 6 1.2861 -7.9483 -1.1969 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.8747 -4.9842 0.7817 26 1 3.0640 -6.0348 0.8890 27 1 3.0627 -6.0349 -0.8910 28 1 1.5690 -7.4875 2.1320 29 1 0.2832 -9.5861 2.1379 30 1 -0.3735 -10.6353 0.0100 31 1 0.8538 -10.3415 -2.7128 32 1 1.5685 -7.4881 -2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308507635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = -54.676699 kcal Electronic energy + Delta-G solvation = -13920.589781 eV Core-core repulsion = 11458.584050 eV Total energy + Delta-G solvation = -2462.005731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70032 -38.23198 -37.00065 -35.07017 -32.88730 -31.00586 -30.33895 -27.04644 -25.05621 -23.51688 -22.50620 -22.15189 -18.95811 -18.49967 -17.41285 -17.04395 -16.57367 -16.23690 -15.94699 -15.61143 -14.99967 -14.59803 -14.23282 -13.90309 -13.65639 -13.14708 -13.08944 -12.82230 -12.51975 -12.48148 -12.41677 -11.93333 -11.53311 -11.37661 -11.20928 -10.56334 -9.82913 -9.58210 -9.27602 -8.20173 -6.32405 0.29339 0.39168 1.40823 1.44372 1.52369 2.40779 2.67107 3.13204 3.26683 3.53542 3.85632 3.98318 4.23030 4.33929 4.39724 4.49996 4.59211 4.66322 4.72579 5.00024 5.05088 5.06966 5.42900 5.46606 5.47365 5.63600 5.65996 5.76944 5.92770 6.11343 6.24692 6.48642 6.84816 6.88378 7.37156 8.91947 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057108 B = 0.004310 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.177444 B = 6495.314516 C = 6601.110182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.696 5.696 12 C 0.098 3.902 13 C -0.071 4.071 14 C -0.131 4.131 15 C -0.102 4.102 16 C -0.152 4.152 17 C 0.094 3.906 18 O -0.511 6.511 19 C -0.143 4.143 20 H 0.264 0.736 21 H -0.008 1.008 22 H -0.009 1.009 23 H 0.024 0.976 24 H 0.060 0.940 25 H 0.339 0.661 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.409 0.591 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 -20.024 1.335 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.327 5.327 12 C -0.030 4.030 13 C -0.072 4.072 14 C -0.150 4.150 15 C -0.120 4.120 16 C -0.170 4.170 17 C 0.050 3.950 18 O -0.325 6.325 19 C -0.162 4.162 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.010 0.990 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.156 0.844 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.164 0.836 31 H 0.268 0.732 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.725 -19.575 0.694 19.938 hybrid contribution 0.769 0.795 0.617 1.266 sum 4.494 -18.780 1.310 19.354 Atomic orbital electron populations 1.70110 1.07936 1.27916 1.51333 1.26002 0.95756 1.03486 0.94536 0.85446 0.78206 0.77799 0.79251 1.19128 1.20842 1.18984 1.21591 0.93612 0.92156 1.51112 0.91920 1.18931 0.94358 0.92428 0.94985 1.21807 0.95592 0.87984 0.99083 1.60523 1.20251 1.01566 1.50335 1.20917 0.93329 0.87072 1.01715 1.19750 0.98607 0.95534 0.93311 1.21340 0.99401 0.96571 0.97677 1.21324 0.96839 0.95057 0.98749 1.21665 1.01884 1.01860 0.91638 1.18602 0.96985 0.93387 0.86046 1.84790 1.49383 1.62019 1.36265 1.21406 0.99587 0.96597 0.98613 0.92725 0.98999 0.99049 0.95746 0.92164 0.84359 0.93350 0.90345 0.84711 0.82846 0.83584 0.73221 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.66 5.23 29.85 0.16 1.82 16 10 C 0.08 3.59 5.62 86.30 0.49 4.07 16 11 N -0.70 -25.61 6.49 -517.93 -3.36 -28.97 16 12 C 0.10 2.82 5.81 85.56 0.50 3.32 16 13 C -0.07 -1.88 5.39 -19.88 -0.11 -1.99 16 14 C -0.13 -2.93 9.70 22.28 0.22 -2.71 16 15 C -0.10 -1.93 10.04 22.25 0.22 -1.70 16 16 C -0.15 -3.02 9.99 22.37 0.22 -2.79 16 17 C 0.09 2.20 6.70 22.51 0.15 2.35 16 18 O -0.51 -10.60 13.50 -92.48 -1.25 -11.85 16 19 C -0.14 -3.78 9.64 22.36 0.22 -3.57 16 20 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 22 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.34 12.27 8.72 -89.69 -0.78 11.49 16 26 H 0.05 1.27 8.09 -2.39 -0.02 1.25 16 27 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 28 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.41 4.02 9.06 -74.05 -0.67 3.35 16 32 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -69.35 281.64 0.12 -69.23 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.34 Total: 14.74 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 2.76 Total: -32.10 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -3.08 Total: -86.59 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.25 Total: -11.85 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.35 0.12 -69.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308507635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.556 kcal (2) G-P(sol) polarization free energy of solvation -69.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds