Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47208 * 300.00492 * 3 2 1 6 6 H 1.48500 * 109.46956 * 60.00134 * 3 2 1 7 7 C 1.38806 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99955 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00477 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00562 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.46694 * 34.99848 * 10 9 7 12 12 C 1.52996 * 109.47377 * 275.00201 * 10 9 7 13 13 C 1.52997 * 109.47131 * 64.99512 * 12 10 9 14 14 O 1.42905 * 109.47264 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47309 * 154.99894 * 10 9 7 16 16 C 1.38238 * 119.99786 * 39.72713 * 15 10 9 17 17 C 1.38237 * 119.99539 * 179.78901 * 16 15 10 18 18 C 1.38234 * 120.00273 * 0.43852 * 17 16 15 19 19 C 1.38236 * 119.99913 * 359.81936 * 18 17 16 20 20 C 1.38235 * 120.00044 * 359.97424 * 19 18 17 21 21 H 0.97004 * 119.99687 * 359.97438 * 1 2 3 22 22 H 0.97003 * 120.00041 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46997 * 304.99938 * 12 10 9 24 24 H 1.08992 * 109.47534 * 184.99992 * 12 10 9 25 25 H 1.09001 * 109.47289 * 60.00050 * 13 12 10 26 26 H 1.09004 * 109.47261 * 300.00306 * 13 12 10 27 27 H 0.96691 * 114.00079 * 179.97438 * 14 13 12 28 28 H 1.08001 * 120.00063 * 359.97438 * 16 15 10 29 29 H 1.08000 * 119.99702 * 180.27560 * 17 16 15 30 30 H 1.08001 * 120.00175 * 179.83180 * 18 17 16 31 31 H 1.08003 * 119.99968 * 179.97438 * 19 18 17 32 32 H 1.07999 * 120.00241 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9692 -3.5508 0.5871 12 6 2.4208 -4.0350 -1.4391 13 6 3.3975 -3.0032 -2.0069 14 8 3.7359 -3.3561 -3.3497 15 6 1.1945 -4.7360 0.5990 16 6 -0.1570 -4.7796 0.3117 17 6 -0.9483 -5.7721 0.8592 18 6 -0.3899 -6.7155 1.7012 19 6 0.9606 -6.6687 1.9928 20 6 1.7527 -5.6787 1.4419 21 1 -0.4850 0.8401 0.0004 22 1 0.3556 -2.3881 0.0002 23 1 1.5175 -4.0541 -2.0488 24 1 2.8867 -5.0203 -1.4490 25 1 4.3009 -2.9840 -1.3972 26 1 2.9315 -2.0179 -1.9970 27 1 4.3529 -2.7441 -3.7736 28 1 -0.5941 -4.0401 -0.3429 29 1 -2.0033 -5.8088 0.6312 30 1 -1.0086 -7.4893 2.1312 31 1 1.3968 -7.4055 2.6510 32 1 2.8079 -5.6424 1.6693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308520074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = -21.734840 kcal Electronic energy + Delta-G solvation = -14807.929641 eV Core-core repulsion = 12347.352376 eV Total energy + Delta-G solvation = -2460.577265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.05228 -36.70582 -35.09511 -32.37676 -30.53803 -29.86850 -29.11656 -25.27087 -23.08216 -22.06878 -21.46687 -19.68525 -17.56774 -16.57203 -16.26814 -15.27950 -14.82912 -14.28854 -14.19139 -13.69109 -13.17678 -12.94351 -12.90679 -12.65556 -11.97176 -11.81636 -11.15556 -10.91119 -10.89070 -10.76769 -10.59487 -10.15880 -10.05037 -9.68099 -9.29805 -8.93675 -8.52563 -8.27401 -7.03777 -5.83608 -3.12069 1.76599 1.80154 3.38170 3.43351 3.46201 4.18480 4.52677 4.80222 5.24571 5.27416 5.37453 5.47267 5.58723 5.67689 5.84035 5.91006 5.95094 6.12389 6.24784 6.30502 6.41334 6.48961 6.56590 6.82366 6.86063 6.86750 6.94949 7.21239 7.41035 7.61653 8.14748 8.34372 9.45849 10.02262 10.38029 11.38779 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.008990 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.291524 B = 3113.951695 C = 3864.949696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.720 5.720 10 C 0.213 3.787 11 H 0.057 0.943 12 C -0.124 4.124 13 C 0.072 3.928 14 O -0.587 6.587 15 C -0.066 4.066 16 C -0.103 4.103 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.126 4.126 20 C -0.119 4.119 21 H 0.256 0.744 22 H 0.386 0.614 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.370 0.630 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -10.237 0.537 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.362 5.362 10 C 0.103 3.897 11 H 0.075 0.925 12 C -0.165 4.165 13 C -0.004 4.004 14 O -0.392 6.392 15 C -0.067 4.067 16 C -0.121 4.121 17 C -0.140 4.140 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.137 4.137 21 H 0.066 0.934 22 H 0.221 0.779 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.215 0.785 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.645 -10.568 0.688 10.916 hybrid contribution 0.478 1.441 -0.023 1.518 sum 3.123 -9.128 0.666 9.670 Atomic orbital electron populations 1.69669 1.05114 1.25669 1.57058 1.24753 0.95510 0.97676 1.02794 0.86165 0.78775 0.84236 0.77291 1.20525 1.21807 1.21790 1.19242 0.91021 0.83924 1.43007 0.90925 1.42554 1.05922 0.99301 1.88438 1.19134 0.93439 0.84864 0.92298 0.92539 1.22179 0.98877 0.97056 0.98390 1.22456 0.96734 1.00453 0.80792 1.86409 1.68269 1.55240 1.29280 1.20310 0.94689 0.95707 0.96031 1.21092 0.93571 0.97770 0.99689 1.21113 0.99546 0.95396 0.97933 1.21016 0.95237 0.99471 0.99589 1.21016 0.94123 0.98781 1.00443 1.21007 0.99689 0.95232 0.97812 0.93440 0.77856 0.91847 0.93194 0.95095 0.90171 0.78478 0.85605 0.86519 0.86828 0.86706 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.37 7.75 -15.06 -0.12 -6.48 16 8 H 0.07 1.84 7.32 -52.48 -0.38 1.46 16 9 N -0.72 -17.52 5.02 -54.55 -0.27 -17.79 16 10 C 0.21 4.28 2.64 -69.08 -0.18 4.10 16 11 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 12 C -0.12 -2.39 5.24 -26.73 -0.14 -2.53 16 13 C 0.07 1.38 6.31 37.16 0.23 1.62 16 14 O -0.59 -10.37 13.66 -35.23 -0.48 -10.85 16 15 C -0.07 -1.22 4.96 -104.62 -0.52 -1.73 16 16 C -0.10 -1.84 9.06 -39.58 -0.36 -2.20 16 17 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 18 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 19 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 20 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.39 10.01 6.05 -40.82 -0.25 9.77 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.74 5.99 -51.93 -0.31 1.43 16 27 H 0.37 4.74 9.12 45.56 0.42 5.16 16 28 H 0.13 2.38 6.90 -52.49 -0.36 2.02 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 32 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -30.32 272.15 -7.10 -37.42 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -3.40 Total: 13.62 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.75 Total: -16.63 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.45 Total: -44.40 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.48 Total: -10.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.32 -7.10 -37.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308520074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.689 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds