Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47208 * 300.00492 * 3 2 1 6 6 H 1.48500 * 109.46956 * 60.00134 * 3 2 1 7 7 C 1.38806 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99955 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00477 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00562 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.46694 * 34.99848 * 10 9 7 12 12 C 1.52996 * 109.47377 * 275.00201 * 10 9 7 13 13 C 1.52997 * 109.47131 * 64.99512 * 12 10 9 14 14 O 1.42905 * 109.47264 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47309 * 154.99894 * 10 9 7 16 16 C 1.38238 * 119.99786 * 39.72713 * 15 10 9 17 17 C 1.38237 * 119.99539 * 179.78901 * 16 15 10 18 18 C 1.38234 * 120.00273 * 0.43852 * 17 16 15 19 19 C 1.38236 * 119.99913 * 359.81936 * 18 17 16 20 20 C 1.38235 * 120.00044 * 359.97424 * 19 18 17 21 21 H 0.97004 * 119.99687 * 359.97438 * 1 2 3 22 22 H 0.97003 * 120.00041 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46997 * 304.99938 * 12 10 9 24 24 H 1.08992 * 109.47534 * 184.99992 * 12 10 9 25 25 H 1.09001 * 109.47289 * 60.00050 * 13 12 10 26 26 H 1.09004 * 109.47261 * 300.00306 * 13 12 10 27 27 H 0.96691 * 114.00079 * 179.97438 * 14 13 12 28 28 H 1.08001 * 120.00063 * 359.97438 * 16 15 10 29 29 H 1.08000 * 119.99702 * 180.27560 * 17 16 15 30 30 H 1.08001 * 120.00175 * 179.83180 * 18 17 16 31 31 H 1.08003 * 119.99968 * 179.97438 * 19 18 17 32 32 H 1.07999 * 120.00241 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9692 -3.5508 0.5871 12 6 2.4208 -4.0350 -1.4391 13 6 3.3975 -3.0032 -2.0069 14 8 3.7359 -3.3561 -3.3497 15 6 1.1945 -4.7360 0.5990 16 6 -0.1570 -4.7796 0.3117 17 6 -0.9483 -5.7721 0.8592 18 6 -0.3899 -6.7155 1.7012 19 6 0.9606 -6.6687 1.9928 20 6 1.7527 -5.6787 1.4419 21 1 -0.4850 0.8401 0.0004 22 1 0.3556 -2.3881 0.0002 23 1 1.5175 -4.0541 -2.0488 24 1 2.8867 -5.0203 -1.4490 25 1 4.3009 -2.9840 -1.3972 26 1 2.9315 -2.0179 -1.9970 27 1 4.3529 -2.7441 -3.7736 28 1 -0.5941 -4.0401 -0.3429 29 1 -2.0033 -5.8088 0.6312 30 1 -1.0086 -7.4893 2.1312 31 1 1.3968 -7.4055 2.6510 32 1 2.8079 -5.6424 1.6693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308520074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = -42.729196 kcal Electronic energy + Delta-G solvation = -14808.840024 eV Core-core repulsion = 12347.352376 eV Total energy + Delta-G solvation = -2461.487648 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36034 -38.18300 -36.69722 -34.23376 -31.77784 -31.29218 -30.87418 -26.95872 -24.83168 -23.38970 -22.83028 -21.19384 -19.38889 -18.08691 -17.62557 -16.93645 -16.22996 -15.97718 -15.60533 -15.18760 -14.83264 -14.54315 -14.19677 -14.07387 -13.47086 -13.24283 -12.94259 -12.78674 -12.52809 -12.18952 -12.01248 -11.97901 -11.61831 -11.40810 -11.07350 -10.68687 -9.73458 -9.55206 -9.03049 -7.93045 -5.21216 0.53973 0.58565 1.47356 1.47704 1.57105 2.55585 2.95502 3.37094 3.46513 3.89540 4.06912 4.13393 4.25208 4.27565 4.35517 4.50232 4.64150 4.67457 4.76105 4.86003 5.00702 5.19557 5.21894 5.29216 5.36687 5.50964 5.65229 5.68910 5.86436 6.21290 6.27887 6.92858 7.34538 8.07399 8.33060 9.30823 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.008990 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.291524 B = 3113.951695 C = 3864.949696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.732 5.732 10 C 0.214 3.786 11 H 0.059 0.941 12 C -0.116 4.116 13 C 0.079 3.921 14 O -0.595 6.595 15 C -0.092 4.092 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.125 4.125 21 H 0.249 0.751 22 H 0.374 0.626 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.391 0.609 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -12.061 1.405 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.225 1.225 7 C -0.360 4.360 8 H 0.101 0.899 9 N -0.372 5.372 10 C 0.105 3.895 11 H 0.077 0.923 12 C -0.156 4.156 13 C 0.002 3.998 14 O -0.403 6.403 15 C -0.092 4.092 16 C -0.146 4.146 17 C -0.146 4.146 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.144 4.144 21 H 0.058 0.942 22 H 0.207 0.793 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.240 0.760 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.022 -12.424 1.542 13.150 hybrid contribution 0.090 1.849 -0.309 1.877 sum 4.112 -10.576 1.233 11.414 Atomic orbital electron populations 1.69833 1.06666 1.25780 1.59749 1.25526 0.96284 1.00934 1.04166 0.85162 0.78543 0.80228 0.76414 1.18558 1.22393 1.22484 1.19624 0.91543 0.84669 1.40129 0.89921 1.42752 1.05591 1.00490 1.88400 1.19238 0.93428 0.83922 0.92890 0.92298 1.22024 0.98182 0.98089 0.97347 1.22240 0.97064 0.98589 0.81884 1.86361 1.69158 1.56111 1.28647 1.20220 0.94632 0.96521 0.97873 1.21038 0.94150 0.98668 1.00787 1.21372 1.00351 0.94951 0.97894 1.21462 0.95759 0.99251 0.98136 1.21455 0.94063 0.98460 0.99807 1.21254 1.00910 0.95058 0.97152 0.94213 0.79258 0.93950 0.91351 0.93381 0.93313 0.75968 0.88214 0.84730 0.83264 0.83087 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.41 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.23 -12.18 7.75 84.03 0.65 -11.52 16 8 H 0.08 4.16 7.32 -2.91 -0.02 4.13 16 9 N -0.73 -36.53 5.02 -326.51 -1.64 -38.17 16 10 C 0.21 8.62 2.64 44.24 0.12 8.73 16 11 H 0.06 2.32 7.94 -2.39 -0.02 2.31 16 12 C -0.12 -4.44 5.24 30.59 0.16 -4.28 16 13 C 0.08 2.97 6.31 71.98 0.45 3.42 16 14 O -0.59 -20.18 13.66 -148.98 -2.04 -22.21 16 15 C -0.09 -3.33 4.96 -19.86 -0.10 -3.42 16 16 C -0.13 -4.67 9.06 22.27 0.20 -4.46 16 17 C -0.13 -3.76 10.05 22.27 0.22 -3.53 16 18 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 19 C -0.12 -2.94 10.05 22.27 0.22 -2.71 16 20 C -0.13 -3.71 9.67 22.27 0.22 -3.49 16 21 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 22 H 0.37 20.35 6.05 -92.71 -0.56 19.79 16 23 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 2.13 5.99 -2.38 -0.01 2.11 16 27 H 0.39 9.32 9.12 -74.06 -0.68 8.64 16 28 H 0.10 4.06 6.90 -2.91 -0.02 4.04 16 29 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.13 3.42 8.04 -2.91 -0.02 3.40 16 Total: -1.00 -66.00 272.15 1.36 -64.64 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.11 Total: 35.25 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 2.84 Total: -28.07 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -1.35 Total: -97.02 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -2.04 Total: -22.21 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.00 1.36 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308520074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.911 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds