Wall clock time and date at job start Sun Mar 29 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46950 * 325.00192 * 10 9 7 12 12 C 1.53005 * 109.46697 * 85.00477 * 10 9 7 13 13 C 1.53003 * 109.46767 * 294.99416 * 12 10 9 14 14 O 1.42906 * 109.46520 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46696 * 205.00108 * 10 9 7 16 16 C 1.38231 * 120.00293 * 319.72526 * 15 10 9 17 17 C 1.38236 * 120.00019 * 179.81218 * 16 15 10 18 18 C 1.38239 * 119.99930 * 0.40069 * 17 16 15 19 19 C 1.38240 * 119.99754 * 359.85602 * 18 17 16 20 20 C 1.38230 * 120.00283 * 359.95539 * 19 18 17 21 21 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 22 22 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47423 * 54.99971 * 12 10 9 24 24 H 1.09004 * 109.46470 * 174.99823 * 12 10 9 25 25 H 1.08993 * 109.47242 * 300.00455 * 13 12 10 26 26 H 1.09004 * 109.46809 * 60.01126 * 13 12 10 27 27 H 0.96700 * 113.99630 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.99864 * 0.02562 * 16 15 10 29 29 H 1.07997 * 119.99978 * 180.23127 * 17 16 15 30 30 H 1.07992 * 120.00304 * 179.83142 * 18 17 16 31 31 H 1.07998 * 119.99804 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.00509 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5492 -0.6042 12 6 2.4272 -4.0388 1.4233 13 6 3.4066 -3.0085 1.9893 14 8 3.7520 -3.3657 3.3292 15 6 1.1915 -4.7343 -0.6111 16 6 -0.1563 -4.7855 -0.3087 17 6 -0.9518 -5.7715 -0.8617 18 6 -0.3977 -6.7114 -1.7107 19 6 0.9513 -6.6633 -2.0089 20 6 1.7459 -5.6750 -1.4589 21 1 -0.4850 0.8400 0.0040 22 1 0.3555 -2.3880 -0.0021 23 1 1.5267 -4.0596 2.0371 24 1 2.8932 -5.0242 1.4284 25 1 4.3071 -2.9878 1.3755 26 1 2.9406 -2.0232 1.9842 27 1 4.3716 -2.7552 3.7516 28 1 -0.5886 -4.0530 0.3569 29 1 -2.0056 -5.8093 -0.6284 30 1 -1.0186 -7.4834 -2.1406 31 1 1.3842 -7.3978 -2.6717 32 1 2.7999 -5.6377 -1.6915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308520075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:39 Heat of formation + Delta-G solvation = -21.810170 kcal Electronic energy + Delta-G solvation = -14807.605459 eV Core-core repulsion = 12347.024928 eV Total energy + Delta-G solvation = -2460.580531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05199 -36.70538 -35.09406 -32.37650 -30.53785 -29.86757 -29.11589 -25.27076 -23.07859 -22.07238 -21.46623 -19.68603 -17.56588 -16.57190 -16.26944 -15.28012 -14.82765 -14.28847 -14.19241 -13.69001 -13.17626 -12.94505 -12.90839 -12.65172 -11.97358 -11.81607 -11.15792 -10.91030 -10.89173 -10.76758 -10.59367 -10.15937 -10.05032 -9.68151 -9.29882 -8.93622 -8.52595 -8.27395 -7.03727 -5.83573 -3.12031 1.76604 1.80133 3.38176 3.43376 3.46217 4.18478 4.52728 4.80181 5.24559 5.27480 5.37446 5.47229 5.58746 5.67725 5.84077 5.90998 5.95046 6.12325 6.24714 6.30463 6.41303 6.48965 6.56574 6.82343 6.86041 6.86636 6.94865 7.21254 7.41026 7.61687 8.14652 8.34381 9.45860 10.02296 10.38086 11.38810 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.008988 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.305920 B = 3114.347546 C = 3865.304411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.720 5.720 10 C 0.213 3.787 11 H 0.057 0.943 12 C -0.124 4.124 13 C 0.072 3.928 14 O -0.587 6.587 15 C -0.066 4.066 16 C -0.103 4.103 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.119 4.119 21 H 0.256 0.744 22 H 0.386 0.614 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.370 0.630 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -10.241 -0.552 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.362 5.362 10 C 0.103 3.897 11 H 0.075 0.925 12 C -0.165 4.165 13 C -0.004 4.004 14 O -0.392 6.392 15 C -0.067 4.067 16 C -0.121 4.121 17 C -0.140 4.140 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.137 4.137 21 H 0.066 0.934 22 H 0.221 0.779 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.215 0.785 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.645 -10.572 -0.707 10.921 hybrid contribution 0.478 1.441 0.026 1.518 sum 3.122 -9.131 -0.681 9.675 Atomic orbital electron populations 1.69668 1.05114 1.25674 1.57051 1.24755 0.95511 0.97678 1.02795 0.86163 0.78774 0.84233 0.77288 1.20526 1.21793 1.21808 1.19244 0.91021 0.83925 1.43010 0.90921 1.42553 1.05921 0.99300 1.88433 1.19139 0.93404 0.84877 0.92321 0.92537 1.22185 0.98847 0.97062 0.98413 1.22457 0.96685 1.00424 0.80869 1.86411 1.67968 1.55222 1.29597 1.20308 0.94724 0.95684 0.96000 1.21090 0.93578 0.97802 0.99666 1.21113 0.99523 0.95470 0.97866 1.21016 0.95265 0.99467 0.99572 1.21015 0.94122 0.98797 1.00421 1.21008 0.99677 0.95224 0.97839 0.93439 0.77857 0.91845 0.93196 0.95099 0.90164 0.78479 0.85621 0.86518 0.86828 0.86707 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.37 7.75 -15.06 -0.12 -6.48 16 8 H 0.07 1.85 7.32 -52.49 -0.38 1.46 16 9 N -0.72 -17.52 5.02 -54.54 -0.27 -17.79 16 10 C 0.21 4.28 2.64 -69.08 -0.18 4.10 16 11 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 12 C -0.12 -2.39 5.24 -26.73 -0.14 -2.53 16 13 C 0.07 1.38 6.31 37.16 0.23 1.61 16 14 O -0.59 -10.37 13.66 -35.23 -0.48 -10.85 16 15 C -0.07 -1.21 4.95 -104.62 -0.52 -1.73 16 16 C -0.10 -1.85 9.05 -39.58 -0.36 -2.20 16 17 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 18 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 19 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 20 C -0.12 -1.89 9.67 -39.58 -0.38 -2.28 16 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.39 10.02 6.08 -40.82 -0.25 9.77 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.74 5.99 -51.93 -0.31 1.43 16 27 H 0.37 4.74 9.12 45.56 0.42 5.15 16 28 H 0.13 2.38 6.93 -52.49 -0.36 2.01 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 LS Contribution 272.19 15.07 4.10 4.10 Total: -1.00 -30.33 272.19 -7.10 -37.43 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -3.40 Total: 13.61 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.75 Total: -16.63 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.45 Total: -44.41 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.48 Total: -10.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.33 -7.10 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308520075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.619 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds