Wall clock time and date at job start Sun Mar 29 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46950 * 325.00192 * 10 9 7 12 12 C 1.53005 * 109.46697 * 85.00477 * 10 9 7 13 13 C 1.53003 * 109.46767 * 294.99416 * 12 10 9 14 14 O 1.42906 * 109.46520 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46696 * 205.00108 * 10 9 7 16 16 C 1.38231 * 120.00293 * 319.72526 * 15 10 9 17 17 C 1.38236 * 120.00019 * 179.81218 * 16 15 10 18 18 C 1.38239 * 119.99930 * 0.40069 * 17 16 15 19 19 C 1.38240 * 119.99754 * 359.85602 * 18 17 16 20 20 C 1.38230 * 120.00283 * 359.95539 * 19 18 17 21 21 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 22 22 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47423 * 54.99971 * 12 10 9 24 24 H 1.09004 * 109.46470 * 174.99823 * 12 10 9 25 25 H 1.08993 * 109.47242 * 300.00455 * 13 12 10 26 26 H 1.09004 * 109.46809 * 60.01126 * 13 12 10 27 27 H 0.96700 * 113.99630 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.99864 * 0.02562 * 16 15 10 29 29 H 1.07997 * 119.99978 * 180.23127 * 17 16 15 30 30 H 1.07992 * 120.00304 * 179.83142 * 18 17 16 31 31 H 1.07998 * 119.99804 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.00509 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5492 -0.6042 12 6 2.4272 -4.0388 1.4233 13 6 3.4066 -3.0085 1.9893 14 8 3.7520 -3.3657 3.3292 15 6 1.1915 -4.7343 -0.6111 16 6 -0.1563 -4.7855 -0.3087 17 6 -0.9518 -5.7715 -0.8617 18 6 -0.3977 -6.7114 -1.7107 19 6 0.9513 -6.6633 -2.0089 20 6 1.7459 -5.6750 -1.4589 21 1 -0.4850 0.8400 0.0040 22 1 0.3555 -2.3880 -0.0021 23 1 1.5267 -4.0596 2.0371 24 1 2.8932 -5.0242 1.4284 25 1 4.3071 -2.9878 1.3755 26 1 2.9406 -2.0232 1.9842 27 1 4.3716 -2.7552 3.7516 28 1 -0.5886 -4.0530 0.3569 29 1 -2.0056 -5.8093 -0.6284 30 1 -1.0186 -7.4834 -2.1406 31 1 1.3842 -7.3978 -2.6717 32 1 2.7999 -5.6377 -1.6915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308520075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:39 Heat of formation + Delta-G solvation = -42.807930 kcal Electronic energy + Delta-G solvation = -14808.515991 eV Core-core repulsion = 12347.024928 eV Total energy + Delta-G solvation = -2461.491062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35976 -38.18209 -36.69605 -34.23333 -31.77684 -31.29292 -30.87214 -26.95864 -24.82851 -23.39270 -22.82897 -21.19447 -19.38774 -18.08647 -17.62517 -16.93700 -16.22813 -15.97801 -15.60488 -15.18571 -14.83533 -14.54289 -14.19658 -14.07136 -13.47116 -13.24335 -12.94468 -12.78469 -12.52913 -12.18998 -12.01206 -11.97719 -11.61972 -11.40829 -11.07344 -10.68652 -9.73468 -9.55199 -9.03003 -7.93022 -5.21189 0.53980 0.58565 1.47317 1.47778 1.57116 2.55617 2.95526 3.37061 3.46538 3.89608 4.06947 4.13473 4.25199 4.27614 4.35527 4.50221 4.64171 4.67367 4.76125 4.85993 5.00654 5.19578 5.21915 5.29213 5.36689 5.51005 5.65214 5.68884 5.86460 6.21292 6.27883 6.92836 7.34531 8.07410 8.33081 9.30844 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.008988 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.305920 B = 3114.347546 C = 3865.304411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.732 5.732 10 C 0.214 3.786 11 H 0.059 0.941 12 C -0.116 4.116 13 C 0.079 3.921 14 O -0.595 6.595 15 C -0.092 4.092 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.125 4.125 21 H 0.249 0.751 22 H 0.374 0.626 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.392 0.608 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 -12.058 -1.427 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.224 1.224 7 C -0.360 4.360 8 H 0.101 0.899 9 N -0.372 5.372 10 C 0.105 3.895 11 H 0.077 0.923 12 C -0.156 4.156 13 C 0.002 3.998 14 O -0.403 6.403 15 C -0.092 4.092 16 C -0.146 4.146 17 C -0.146 4.146 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.144 4.144 21 H 0.058 0.942 22 H 0.207 0.793 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.240 0.760 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.015 -12.421 -1.569 13.148 hybrid contribution 0.092 1.846 0.314 1.875 sum 4.107 -10.575 -1.255 11.413 Atomic orbital electron populations 1.69832 1.06667 1.25784 1.59744 1.25528 0.96284 1.00936 1.04168 0.85159 0.78543 0.80225 0.76412 1.18558 1.22503 1.22380 1.19627 0.91543 0.84669 1.40129 0.89916 1.42751 1.05585 1.00490 1.88398 1.19242 0.93395 0.83930 0.92911 0.92300 1.22030 0.98162 0.98090 0.97363 1.22240 0.97011 0.98565 0.81962 1.86364 1.68860 1.56087 1.28967 1.20220 0.94676 0.96502 0.97841 1.21036 0.94166 0.98719 1.00717 1.21373 1.00317 0.95032 0.97843 1.21463 0.95791 0.99237 0.98125 1.21453 0.94052 0.98469 0.99808 1.21255 1.00899 0.95050 0.97181 0.94213 0.79265 0.93939 0.91358 0.93389 0.93300 0.75967 0.88210 0.84729 0.83268 0.83092 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.23 -12.18 7.75 84.03 0.65 -11.52 16 8 H 0.08 4.16 7.32 -2.91 -0.02 4.14 16 9 N -0.73 -36.53 5.02 -326.48 -1.64 -38.17 16 10 C 0.21 8.62 2.64 44.25 0.12 8.73 16 11 H 0.06 2.32 7.94 -2.39 -0.02 2.31 16 12 C -0.12 -4.44 5.24 30.60 0.16 -4.28 16 13 C 0.08 2.97 6.31 71.98 0.45 3.42 16 14 O -0.59 -20.16 13.66 -148.98 -2.04 -22.20 16 15 C -0.09 -3.32 4.95 -19.86 -0.10 -3.42 16 16 C -0.13 -4.66 9.05 22.27 0.20 -4.46 16 17 C -0.13 -3.76 10.05 22.27 0.22 -3.53 16 18 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 19 C -0.12 -2.94 10.05 22.27 0.22 -2.71 16 20 C -0.13 -3.71 9.67 22.27 0.22 -3.49 16 21 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 22 H 0.37 20.35 6.08 -92.71 -0.56 19.79 16 23 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 2.13 5.99 -2.39 -0.01 2.12 16 27 H 0.39 9.31 9.12 -74.06 -0.68 8.64 16 28 H 0.10 4.05 6.93 -2.91 -0.02 4.03 16 29 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.13 3.42 8.04 -2.91 -0.02 3.40 16 Total: -1.00 -66.00 272.19 1.36 -64.64 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.12 Total: 35.24 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 2.84 Total: -28.07 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -1.35 Total: -97.02 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -2.04 Total: -22.20 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.00 1.36 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308520075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.830 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds