Wall clock time and date at job start Sun Mar 29 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47309 * 101.60408 * 3 2 1 5 5 C 1.37099 * 119.99588 * 275.62754 * 4 3 2 6 6 H 1.07995 * 119.99992 * 142.29080 * 5 4 3 7 7 C 1.38949 * 120.00230 * 322.28899 * 5 4 3 8 8 N 1.31414 * 120.00122 * 160.62462 * 7 5 4 9 9 Si 1.86794 * 119.99977 * 340.63362 * 7 5 4 10 10 H 1.48497 * 109.47347 * 92.78135 * 9 7 5 11 11 H 1.48502 * 109.47349 * 212.78370 * 9 7 5 12 12 H 1.48496 * 109.47276 * 332.78047 * 9 7 5 13 13 C 1.34767 * 120.00181 * 95.62359 * 4 3 2 14 14 O 1.21294 * 119.99919 * 184.42909 * 13 4 3 15 15 C 1.50702 * 120.00410 * 4.16071 * 13 4 3 16 16 C 1.53007 * 115.54747 * 291.13548 * 15 13 4 17 17 C 1.53000 * 109.46676 * 299.42532 * 16 15 13 18 18 C 1.52999 * 117.50296 * 145.46091 * 15 13 4 19 19 C 1.53002 * 117.49931 * 76.79626 * 15 13 4 20 20 H 4.40642 * 5.51446 * 180.02562 * 4 1 2 21 21 H 1.08997 * 109.47503 * 341.60129 * 3 2 1 22 22 H 1.08998 * 109.47282 * 221.59857 * 3 2 1 23 23 H 0.97003 * 119.99980 * 180.02562 * 8 7 5 24 24 H 1.09000 * 109.47088 * 59.42375 * 16 15 13 25 25 H 1.08999 * 109.46764 * 179.42605 * 16 15 13 26 26 H 1.09003 * 109.47012 * 56.04330 * 17 16 15 27 27 H 1.09001 * 109.46513 * 176.03940 * 17 16 15 28 28 H 1.09000 * 109.47413 * 296.04210 * 17 16 15 29 29 H 1.09001 * 117.49676 * 0.02562 * 18 15 13 30 30 H 1.08996 * 117.49688 * 145.02130 * 18 15 13 31 31 H 1.08998 * 117.49828 * 214.98440 * 19 15 13 32 32 H 1.08998 * 117.49750 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2787 -1.3530 5 6 3.2534 -0.7409 -2.2617 6 1 3.0112 -0.5698 -3.3002 7 6 3.6859 -1.9945 -1.8467 8 7 3.4477 -3.0513 -2.5906 9 14 4.6057 -2.1775 -0.2312 10 1 3.6420 -2.4901 0.8545 11 1 5.5952 -3.2787 -0.3470 12 1 5.3112 -0.9092 0.0832 13 6 3.4662 1.5367 -1.7044 14 8 3.7935 1.7810 -2.8465 15 6 3.4248 2.6411 -0.6798 16 6 2.0295 3.0371 -0.1924 17 6 1.1971 3.5322 -1.3769 18 6 4.4747 3.7484 -0.7918 19 6 4.5721 2.7113 0.3300 20 1 -1.0500 0.0002 0.0001 21 1 3.0098 -0.9743 0.3243 22 1 3.0090 0.7693 0.6823 23 1 3.7493 -3.9265 -2.3006 24 1 1.5427 2.1718 0.2574 25 1 2.1156 3.8317 0.5487 26 1 1.1699 2.7630 -2.1487 27 1 0.1822 3.7477 -1.0427 28 1 1.6462 4.4386 -1.7829 29 1 5.1951 3.6784 -1.6068 30 1 4.1715 4.7589 -0.5179 31 1 4.3330 3.0400 1.3413 32 1 5.3566 1.9585 0.2535 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308587616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:56 Heat of formation + Delta-G solvation = 58.378196 kcal Electronic energy + Delta-G solvation = -15577.645695 eV Core-core repulsion = 13120.542393 eV Total energy + Delta-G solvation = -2457.103303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62496 -36.44545 -35.29165 -32.64805 -31.63324 -31.44957 -26.80480 -25.73737 -23.62568 -22.16917 -21.47953 -18.60760 -18.03044 -16.67034 -15.91381 -15.86558 -14.99875 -14.46982 -14.05906 -13.59005 -13.16261 -13.01797 -12.63218 -12.26691 -12.18603 -11.84647 -11.32199 -11.18944 -11.01041 -10.86696 -10.62822 -10.27006 -9.95034 -9.80971 -9.67653 -9.36183 -9.07358 -8.49169 -7.88224 -6.39712 -4.00132 2.97706 3.15811 3.17696 3.19756 3.39256 3.63516 4.03029 4.11146 4.51473 4.83594 4.94194 5.03482 5.16897 5.35477 5.40842 5.66176 5.76761 5.80372 5.85372 5.94399 5.96517 6.12754 6.19088 6.36096 6.40540 6.46304 6.48169 6.62794 7.52719 8.14310 8.27141 8.47854 8.92527 9.28267 9.73062 10.72495 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.012619 C = 0.011258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.879178 B = 2218.409281 C = 2486.580939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.168 4.168 3 C 0.191 3.809 4 N -0.459 5.459 5 C -0.316 4.316 6 H 0.107 0.893 7 C 0.061 3.939 8 N -0.863 5.863 9 Si 0.870 3.130 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.261 1.261 13 C 0.511 3.489 14 O -0.554 6.554 15 C -0.149 4.149 16 C -0.088 4.088 17 C -0.145 4.145 18 C -0.146 4.146 19 C -0.173 4.173 20 H 0.213 0.787 21 H 0.085 0.915 22 H 0.094 0.906 23 H 0.274 0.726 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 8.995 9.757 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.170 4.170 3 C 0.068 3.932 4 N -0.180 5.180 5 C -0.443 4.443 6 H 0.124 0.876 7 C -0.145 4.145 8 N -0.499 5.499 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.299 3.701 14 O -0.434 6.434 15 C -0.152 4.152 16 C -0.126 4.126 17 C -0.202 4.202 18 C -0.184 4.184 19 C -0.210 4.210 20 H 0.230 0.770 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.854 8.886 9.092 12.848 hybrid contribution 0.201 -0.443 0.875 1.002 sum -1.653 8.443 9.967 13.167 Atomic orbital electron populations 1.24678 0.95607 1.02484 1.00855 1.23583 0.94779 0.98880 0.99737 1.18953 0.84242 1.02140 0.87852 1.43579 1.56761 1.07154 1.10502 1.19052 1.44766 0.87848 0.92660 0.87580 1.25326 0.96072 0.95132 0.97925 1.69725 1.42504 0.98717 1.38966 0.87072 0.80594 0.78886 0.83616 1.19903 1.21118 1.18487 1.19228 0.80033 0.82697 0.88101 1.90557 1.50392 1.82047 1.20371 1.21583 0.92740 0.99856 1.01024 1.21212 0.92343 1.01154 0.97861 1.21652 0.98571 1.01513 0.98492 1.22891 1.01072 0.93821 1.00571 1.23105 1.00317 1.02871 0.94754 0.77043 0.89756 0.88820 0.91535 0.90475 0.91891 0.92199 0.93073 0.92852 0.88153 0.88679 0.88444 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.78 19.20 29.55 0.57 -3.21 16 2 C -0.17 -3.37 11.36 -37.12 -0.42 -3.80 16 3 C 0.19 4.04 4.41 -6.83 -0.03 4.01 16 4 N -0.46 -11.41 2.16 -117.93 -0.26 -11.67 16 5 C -0.32 -9.15 9.36 -14.93 -0.14 -9.29 16 6 H 0.11 3.46 7.88 -52.49 -0.41 3.04 16 7 C 0.06 1.72 5.37 -17.47 -0.09 1.62 16 8 N -0.86 -25.28 13.96 55.50 0.77 -24.50 16 9 Si 0.87 20.38 24.94 -169.99 -4.24 16.14 16 10 H -0.27 -5.94 6.62 56.52 0.37 -5.57 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.51 12.22 5.98 -10.99 -0.07 12.16 16 14 O -0.55 -15.35 16.64 5.54 0.09 -15.26 16 15 C -0.15 -2.68 0.81 -155.66 -0.13 -2.81 16 16 C -0.09 -1.37 5.51 -26.73 -0.15 -1.52 16 17 C -0.14 -2.29 9.80 37.16 0.36 -1.92 16 18 C -0.15 -2.28 9.78 -26.69 -0.26 -2.54 16 19 C -0.17 -2.63 8.98 -26.69 -0.24 -2.87 16 20 H 0.21 2.74 7.80 -54.09 -0.42 2.31 16 21 H 0.09 1.86 2.74 -51.93 -0.14 1.72 16 22 H 0.09 1.68 5.28 -51.93 -0.27 1.41 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.08 1.24 4.38 -51.93 -0.23 1.01 16 25 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 26 H 0.06 1.14 7.44 -51.93 -0.39 0.76 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.71 8.06 -51.93 -0.42 1.29 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 269.81 15.07 4.07 4.07 Total: -1.00 -32.20 269.81 -4.14 -36.34 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.98 Total: 5.06 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.59 Total: -10.17 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.52 Total: -36.17 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.09 Total: -15.26 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.24 Total: 16.14 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.20 -4.14 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308587616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.717 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds