Wall clock time and date at job start Sun Mar 29 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47309 * 101.60408 * 3 2 1 5 5 C 1.37099 * 119.99588 * 275.62754 * 4 3 2 6 6 H 1.07995 * 119.99992 * 142.29080 * 5 4 3 7 7 C 1.38949 * 120.00230 * 322.28899 * 5 4 3 8 8 N 1.31414 * 120.00122 * 160.62462 * 7 5 4 9 9 Si 1.86794 * 119.99977 * 340.63362 * 7 5 4 10 10 H 1.48497 * 109.47347 * 92.78135 * 9 7 5 11 11 H 1.48502 * 109.47349 * 212.78370 * 9 7 5 12 12 H 1.48496 * 109.47276 * 332.78047 * 9 7 5 13 13 C 1.34767 * 120.00181 * 95.62359 * 4 3 2 14 14 O 1.21294 * 119.99919 * 184.42909 * 13 4 3 15 15 C 1.50702 * 120.00410 * 4.16071 * 13 4 3 16 16 C 1.53007 * 115.54747 * 291.13548 * 15 13 4 17 17 C 1.53000 * 109.46676 * 299.42532 * 16 15 13 18 18 C 1.52999 * 117.50296 * 145.46091 * 15 13 4 19 19 C 1.53002 * 117.49931 * 76.79626 * 15 13 4 20 20 H 4.40642 * 5.51446 * 180.02562 * 4 1 2 21 21 H 1.08997 * 109.47503 * 341.60129 * 3 2 1 22 22 H 1.08998 * 109.47282 * 221.59857 * 3 2 1 23 23 H 0.97003 * 119.99980 * 180.02562 * 8 7 5 24 24 H 1.09000 * 109.47088 * 59.42375 * 16 15 13 25 25 H 1.08999 * 109.46764 * 179.42605 * 16 15 13 26 26 H 1.09003 * 109.47012 * 56.04330 * 17 16 15 27 27 H 1.09001 * 109.46513 * 176.03940 * 17 16 15 28 28 H 1.09000 * 109.47413 * 296.04210 * 17 16 15 29 29 H 1.09001 * 117.49676 * 0.02562 * 18 15 13 30 30 H 1.08996 * 117.49688 * 145.02130 * 18 15 13 31 31 H 1.08998 * 117.49828 * 214.98440 * 19 15 13 32 32 H 1.08998 * 117.49750 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2787 -1.3530 5 6 3.2534 -0.7409 -2.2617 6 1 3.0112 -0.5698 -3.3002 7 6 3.6859 -1.9945 -1.8467 8 7 3.4477 -3.0513 -2.5906 9 14 4.6057 -2.1775 -0.2312 10 1 3.6420 -2.4901 0.8545 11 1 5.5952 -3.2787 -0.3470 12 1 5.3112 -0.9092 0.0832 13 6 3.4662 1.5367 -1.7044 14 8 3.7935 1.7810 -2.8465 15 6 3.4248 2.6411 -0.6798 16 6 2.0295 3.0371 -0.1924 17 6 1.1971 3.5322 -1.3769 18 6 4.4747 3.7484 -0.7918 19 6 4.5721 2.7113 0.3300 20 1 -1.0500 0.0002 0.0001 21 1 3.0098 -0.9743 0.3243 22 1 3.0090 0.7693 0.6823 23 1 3.7493 -3.9265 -2.3006 24 1 1.5427 2.1718 0.2574 25 1 2.1156 3.8317 0.5487 26 1 1.1699 2.7630 -2.1487 27 1 0.1822 3.7477 -1.0427 28 1 1.6462 4.4386 -1.7829 29 1 5.1951 3.6784 -1.6068 30 1 4.1715 4.7589 -0.5179 31 1 4.3330 3.0400 1.3413 32 1 5.3566 1.9585 0.2535 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308587616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:56 Heat of formation + Delta-G solvation = 36.526839 kcal Electronic energy + Delta-G solvation = -15578.593241 eV Core-core repulsion = 13120.542393 eV Total energy + Delta-G solvation = -2458.050849 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28960 -37.96804 -37.16769 -34.53026 -33.39267 -32.70987 -28.54395 -27.59938 -25.05880 -23.42129 -23.03297 -20.26431 -19.77505 -18.44938 -17.77461 -17.40159 -16.54101 -16.09664 -15.53981 -15.16092 -14.81335 -14.70687 -14.17960 -14.09478 -13.86473 -13.23395 -12.89568 -12.69563 -12.53042 -12.34717 -12.09963 -11.96724 -11.39660 -11.33076 -11.22220 -10.92899 -10.74316 -10.32170 -9.93036 -8.55645 -6.22748 1.12777 1.25581 1.37755 1.63701 1.90028 1.92755 2.12592 2.67934 2.87138 2.94210 3.57857 3.66502 3.85055 3.95386 4.07072 4.21216 4.35807 4.46138 4.58835 4.66420 4.74889 4.97268 5.01860 5.08205 5.14061 5.23722 5.27617 5.37025 5.49053 5.97010 6.47902 6.73312 6.85574 7.20744 7.78552 8.61838 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.012619 C = 0.011258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.879178 B = 2218.409281 C = 2486.580939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.227 4.227 3 C 0.192 3.808 4 N -0.469 5.469 5 C -0.338 4.338 6 H 0.039 0.961 7 C 0.012 3.988 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.238 1.238 11 H -0.282 1.282 12 H -0.246 1.246 13 C 0.503 3.497 14 O -0.613 6.613 15 C -0.171 4.171 16 C -0.082 4.082 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.151 4.151 20 H 0.254 0.746 21 H 0.075 0.925 22 H 0.129 0.871 23 H 0.281 0.719 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.009 0.991 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 10.674 14.001 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.228 4.228 3 C 0.071 3.929 4 N -0.189 5.189 5 C -0.466 4.466 6 H 0.057 0.943 7 C -0.190 4.190 8 N -0.548 5.548 9 Si 0.764 3.236 10 H -0.164 1.164 11 H -0.208 1.208 12 H -0.169 1.169 13 C 0.294 3.706 14 O -0.497 6.497 15 C -0.174 4.174 16 C -0.119 4.119 17 C -0.201 4.201 18 C -0.177 4.177 19 C -0.188 4.188 20 H 0.270 0.730 21 H 0.093 0.907 22 H 0.146 0.854 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.127 0.873 26 H 0.029 0.971 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.163 0.837 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.325 10.569 13.364 17.196 hybrid contribution 0.237 -0.940 -0.597 1.139 sum -2.088 9.629 12.767 16.126 Atomic orbital electron populations 1.25659 0.96486 0.99708 0.97821 1.23644 0.95264 1.01500 1.02438 1.19023 0.85429 1.02694 0.85789 1.43667 1.57273 1.06589 1.11393 1.18619 1.46626 0.90027 0.91285 0.94262 1.26176 0.96078 0.93922 1.02832 1.69853 1.43606 0.99530 1.41813 0.85942 0.79366 0.79427 0.78818 1.16388 1.20840 1.16923 1.20369 0.77956 0.83666 0.88653 1.90506 1.52600 1.83165 1.23403 1.21502 0.95626 0.98963 1.01350 1.21255 0.90098 1.02361 0.98181 1.21648 1.00625 1.00139 0.97652 1.23023 0.99086 0.95405 1.00168 1.23298 0.97440 1.01620 0.96399 0.72984 0.90724 0.85382 0.90923 0.90937 0.87289 0.97142 0.90408 0.92127 0.90740 0.84746 0.83707 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.70 19.20 74.32 1.43 -4.27 16 2 C -0.23 -8.72 11.36 31.12 0.35 -8.36 16 3 C 0.19 7.85 4.41 84.57 0.37 8.22 16 4 N -0.47 -23.94 2.16 -645.42 -1.40 -25.33 16 5 C -0.34 -20.82 9.36 84.04 0.79 -20.04 16 6 H 0.04 2.85 7.88 -2.91 -0.02 2.83 16 7 C 0.01 0.70 5.37 84.93 0.46 1.15 16 8 N -0.91 -55.81 13.96 21.66 0.30 -55.51 16 9 Si 0.94 41.99 24.94 68.60 1.71 43.70 16 10 H -0.24 -9.37 6.62 99.48 0.66 -8.71 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 13 C 0.50 24.77 5.98 87.66 0.52 25.29 16 14 O -0.61 -36.37 16.64 -3.07 -0.05 -36.43 16 15 C -0.17 -5.82 0.81 -52.92 -0.04 -5.86 16 16 C -0.08 -2.24 5.51 30.60 0.17 -2.07 16 17 C -0.14 -4.27 9.80 71.98 0.71 -3.57 16 18 C -0.14 -3.95 9.78 30.62 0.30 -3.65 16 19 C -0.15 -3.94 8.98 30.62 0.28 -3.67 16 20 H 0.25 5.42 7.80 -4.42 -0.03 5.38 16 21 H 0.08 3.14 2.74 -2.39 -0.01 3.13 16 22 H 0.13 4.18 5.28 -2.39 -0.01 4.17 16 23 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 24 H 0.07 2.07 4.38 -2.39 -0.01 2.06 16 25 H 0.11 2.05 8.11 -2.39 -0.02 2.03 16 26 H 0.01 0.37 7.44 -2.39 -0.02 0.36 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 2.50 8.06 -2.39 -0.02 2.48 16 30 H 0.13 2.74 8.14 -2.39 -0.02 2.73 16 31 H 0.15 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -78.84 269.81 6.95 -71.88 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.06 Total: 18.52 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 5.33 Total: -16.84 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.09 Total: -80.84 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.05 Total: -36.43 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.71 Total: 43.70 kcal Total: -78.84 6.95 -71.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308587616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.412 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds