Wall clock time and date at job start Sun Mar 29 2020 22:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31854 * 1 3 3 N 1.39534 * 120.00078 * 2 1 4 4 C 1.35813 * 126.10560 * 180.27296 * 3 2 1 5 5 C 1.35326 * 107.61847 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.01526 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47031 * 90.00511 * 6 5 4 8 8 C 1.46893 * 110.99845 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47073 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47147 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00147 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99838 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00118 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 120.00152 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47416 * 89.99303 * 14 12 10 16 16 H 1.48495 * 109.47283 * 210.00101 * 14 12 10 17 17 H 1.48503 * 109.46693 * 329.99816 * 14 12 10 18 18 C 1.39919 * 107.97024 * 0.02562 * 5 4 3 19 19 N 1.30868 * 108.36408 * 359.71391 * 18 5 4 20 20 H 1.08002 * 120.00369 * 359.71395 * 1 2 3 21 21 H 1.07998 * 120.00179 * 179.72065 * 1 2 3 22 22 H 1.08002 * 120.00369 * 180.28605 * 2 1 3 23 23 H 1.08002 * 126.19354 * 0.02562 * 4 3 2 24 24 H 1.09000 * 109.47148 * 210.00715 * 6 5 4 25 25 H 1.09001 * 109.47353 * 330.00756 * 6 5 4 26 26 H 1.00893 * 110.99975 * 303.95509 * 7 6 5 27 27 H 1.09003 * 109.47514 * 299.99600 * 8 7 6 28 28 H 1.08997 * 109.47665 * 60.00077 * 8 7 6 29 29 H 1.09000 * 109.47098 * 300.00540 * 9 8 7 30 30 H 1.09003 * 109.46968 * 60.00211 * 9 8 7 31 31 H 0.96998 * 119.99934 * 180.02562 * 13 12 10 32 32 H 1.07996 * 125.81508 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3666 1.3528 -0.0052 5 6 3.6368 2.6789 -0.0026 6 6 5.0080 3.3038 -0.0060 7 7 5.4484 3.5108 -1.3922 8 6 6.7841 4.1205 -1.4347 9 6 7.2073 4.3206 -2.8914 10 6 8.5774 4.9466 -2.9350 11 1 9.0948 5.1782 -2.0158 12 6 9.1708 5.2228 -4.1485 13 7 10.3667 5.7687 -4.1866 14 14 8.2762 4.8217 -5.7386 15 1 7.4577 5.9890 -6.1542 16 1 9.2675 4.5093 -6.7991 17 1 7.3919 3.6477 -5.5263 18 6 2.4188 3.3675 0.0050 19 7 1.4486 2.4893 0.0007 20 1 -0.5401 0.9353 0.0047 21 1 -0.5400 -0.9353 -0.0046 22 1 1.8586 -0.9353 -0.0047 23 1 4.0935 0.5540 -0.0105 24 1 4.9715 4.2629 0.5107 25 1 5.7097 2.6432 0.5033 26 1 5.4288 2.6456 -1.9108 27 1 6.7595 5.0853 -0.9281 28 1 7.4984 3.4660 -0.9352 29 1 7.2318 3.3561 -3.3984 30 1 6.4930 4.9755 -3.3905 31 1 10.7840 5.9633 -5.0404 32 1 2.2997 4.4409 0.0091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308647574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:28 Heat of formation + Delta-G solvation = 73.963375 kcal Electronic energy + Delta-G solvation = -13902.140443 eV Core-core repulsion = 11478.005716 eV Total energy + Delta-G solvation = -2424.134727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.30360 -37.64016 -35.80386 -34.88158 -32.66366 -31.43928 -30.21519 -26.74806 -24.65938 -23.92455 -22.25780 -21.43155 -20.30640 -18.92992 -18.28524 -16.64187 -16.33810 -16.14658 -15.53646 -15.43102 -14.98504 -14.74602 -14.54189 -14.18122 -13.69476 -13.33154 -13.06209 -12.85614 -12.58009 -12.05144 -11.93881 -11.78492 -11.61864 -11.45183 -11.38228 -10.75353 -10.12096 -9.28469 -9.04597 -8.28351 -6.32443 0.30406 1.39063 1.39519 1.52334 1.61899 1.73611 1.82295 2.38098 3.07482 3.48818 3.68735 3.92937 4.15038 4.20910 4.45205 4.52810 4.59983 4.70386 4.83929 4.89724 5.01547 5.11334 5.24367 5.33552 5.38588 5.53293 5.65777 5.68654 6.21004 6.28895 6.35202 6.59421 6.67598 6.77095 7.32565 8.88330 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051446 B = 0.004520 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.129482 B = 6192.849777 C = 6453.969684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.054 3.946 3 N -0.340 5.340 4 C 0.063 3.937 5 C -0.231 4.231 6 C 0.139 3.861 7 N -0.693 5.693 8 C 0.087 3.913 9 C -0.005 4.005 10 C -0.532 4.532 11 H 0.034 0.966 12 C 0.005 3.995 13 N -0.951 5.951 14 Si 0.954 3.046 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.247 1.247 18 C 0.065 3.935 19 N -0.332 5.332 20 H 0.089 0.911 21 H 0.154 0.846 22 H 0.194 0.806 23 H 0.209 0.791 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.340 0.660 27 H 0.058 0.942 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.077 -13.553 8.664 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.055 4.055 3 N -0.117 5.117 4 C -0.081 4.081 5 C -0.242 4.242 6 C 0.010 3.990 7 N -0.324 5.324 8 C -0.042 4.042 9 C -0.043 4.043 10 C -0.571 4.571 11 H 0.052 0.948 12 C -0.192 4.192 13 N -0.592 5.592 14 Si 0.777 3.223 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.171 1.171 18 C -0.121 4.121 19 N -0.152 5.152 20 H 0.107 0.893 21 H 0.171 0.829 22 H 0.211 0.789 23 H 0.226 0.774 24 H 0.097 0.903 25 H 0.063 0.937 26 H 0.157 0.843 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -19.573 -13.167 8.507 25.077 hybrid contribution 1.587 -0.238 -0.463 1.670 sum -17.986 -13.405 8.044 23.831 Atomic orbital electron populations 1.24208 0.94628 1.04136 1.01274 1.21930 0.94514 0.85345 1.03677 1.46394 1.04844 1.05149 1.55359 1.23113 0.85562 0.99017 1.00372 1.20164 0.96000 0.92646 1.15390 1.20118 0.90090 0.99628 0.89162 1.60536 1.26532 1.31627 1.13731 1.21629 0.87457 0.98067 0.97057 1.19446 0.93960 0.96216 0.94698 1.21441 1.02096 1.40386 0.93171 0.94765 1.25994 0.95511 0.94370 1.03331 1.70063 1.16867 1.45125 1.27169 0.85608 0.78530 0.80015 0.78137 1.19465 1.20940 1.17098 1.24232 0.90011 1.00604 0.97278 1.77325 1.23468 0.88220 1.26216 0.89251 0.82874 0.78877 0.77443 0.90338 0.93735 0.84258 0.92395 0.96084 0.96280 0.96300 0.92467 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 14.35 67.01 0.96 -1.95 16 2 C 0.05 0.81 10.78 82.66 0.89 1.70 16 3 N -0.34 -7.49 3.80 -194.21 -0.74 -8.23 16 4 C 0.06 1.25 11.38 83.40 0.95 2.20 16 5 C -0.23 -5.50 5.61 -20.13 -0.11 -5.61 16 6 C 0.14 3.53 6.17 85.55 0.53 4.06 16 7 N -0.69 -21.89 6.49 -517.92 -3.36 -25.26 16 8 C 0.09 3.38 5.62 86.31 0.49 3.87 16 9 C -0.01 -0.25 4.30 29.85 0.13 -0.13 16 10 C -0.53 -30.99 9.66 25.60 0.25 -30.74 16 11 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 12 C 0.00 0.28 5.47 84.66 0.46 0.74 16 13 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 14 Si 0.95 45.01 27.47 68.60 1.88 46.90 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 17 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 18 C 0.07 1.65 11.95 85.24 1.02 2.67 16 19 N -0.33 -8.96 11.73 -56.98 -0.67 -9.63 16 20 H 0.09 1.75 7.54 -2.91 -0.02 1.73 16 21 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 22 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 23 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.34 10.11 8.72 -89.70 -0.78 9.33 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 30 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.20 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -71.71 281.62 3.24 -68.48 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.26 Total: 10.79 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 5.56 Total: -23.19 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -4.47 Total: -102.98 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -71.71 3.24 -68.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308647574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.440 kcal (2) G-P(sol) polarization free energy of solvation -71.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds