Wall clock time and date at job start Sun Mar 29 2020 22:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31795 * 119.12351 * 2 1 4 4 C 1.32337 * 120.81714 * 179.97438 * 3 2 1 5 5 C 1.38593 * 119.10633 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.80073 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.46974 * 90.00514 * 6 5 4 8 8 C 1.46904 * 110.99588 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47811 * 35.00026 * 8 7 6 10 10 C 1.52999 * 109.47076 * 274.99504 * 8 7 6 11 11 C 1.50708 * 109.47075 * 154.99953 * 8 7 6 12 12 H 1.08004 * 119.99758 * 5.37097 * 11 8 7 13 13 C 1.37871 * 120.00151 * 185.37127 * 11 8 7 14 14 N 1.31515 * 120.00255 * 184.88942 * 13 11 8 15 15 Si 1.86805 * 120.00036 * 5.16628 * 13 11 8 16 16 H 1.48497 * 109.47004 * 269.72193 * 15 13 11 17 17 H 1.48503 * 109.46903 * 29.72486 * 15 13 11 18 18 H 1.48498 * 109.46970 * 149.72467 * 15 13 11 19 19 C 1.38594 * 118.39900 * 0.28106 * 5 4 3 20 20 N 1.31798 * 119.12315 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47401 * 89.99767 * 1 2 3 22 22 H 1.08999 * 109.47313 * 210.00148 * 1 2 3 23 23 H 1.08995 * 109.47465 * 330.00026 * 1 2 3 24 24 H 1.08001 * 120.44340 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.47321 * 330.00127 * 6 5 4 26 26 H 1.09001 * 109.47365 * 210.00571 * 6 5 4 27 27 H 1.00907 * 110.99817 * 303.94941 * 7 6 5 28 28 H 1.08997 * 109.47139 * 294.98703 * 10 8 7 29 29 H 1.09000 * 109.46670 * 54.98586 * 10 8 7 30 30 H 1.09000 * 109.47265 * 174.98459 * 10 8 7 31 31 H 0.97000 * 119.99720 * 355.27241 * 14 13 11 32 32 H 1.07998 * 120.44942 * 179.72211 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1904 0.0005 5 6 4.1808 0.0000 0.0016 6 6 5.6878 0.0000 0.0028 7 7 6.1763 0.0004 1.3881 8 6 7.6448 0.0010 1.4284 9 1 8.0310 0.5904 0.5968 10 6 8.1586 -1.4358 1.3171 11 6 8.1114 0.6020 2.7294 12 1 7.3922 0.8689 3.4896 13 6 9.4564 0.8111 2.9490 14 7 9.8720 1.2451 4.1188 15 14 10.6877 0.4854 1.5825 16 1 11.1534 -0.9225 1.6611 17 1 10.0403 0.7199 0.2667 18 1 11.8479 1.3998 1.7334 19 6 3.4711 -1.1905 -0.0039 20 7 2.1484 -1.1514 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 3.9906 2.1373 0.0009 25 1 6.0516 0.8897 -0.5111 26 1 6.0516 -0.8902 -0.5105 27 1 5.8004 0.7821 1.9038 28 1 7.8465 -2.0022 2.1945 29 1 7.7484 -1.8998 0.4202 30 1 9.2470 -1.4289 1.2573 31 1 9.2283 1.4834 4.8043 32 1 3.9906 -2.1373 -0.0078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308665835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:24 Heat of formation + Delta-G solvation = 39.496733 kcal Electronic energy + Delta-G solvation = -14428.441149 eV Core-core repulsion = 12002.811836 eV Total energy + Delta-G solvation = -2425.629313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00392 -36.55429 -33.85965 -33.64077 -32.18031 -30.12382 -27.98171 -25.13640 -24.57217 -23.93407 -21.61021 -19.77921 -17.71597 -17.63376 -16.65910 -15.30328 -15.17223 -14.53040 -14.05655 -13.62339 -13.44408 -13.24215 -12.74106 -12.56759 -12.48100 -12.11526 -11.92722 -11.55141 -11.14089 -10.75107 -10.56227 -10.50858 -10.09304 -9.80147 -9.19537 -9.16320 -8.74012 -8.53726 -7.66365 -6.50058 -4.17098 0.93476 1.14312 3.32810 3.37278 3.53156 3.75416 3.97610 4.18496 4.41637 4.71283 4.83798 4.95555 5.20692 5.25189 5.33062 5.40995 5.41953 5.76130 5.78381 5.91990 6.11303 6.34847 6.47344 6.50660 6.66038 6.74763 7.01674 7.35361 7.57541 7.94631 8.12379 8.30092 8.34387 8.85600 9.54188 10.89897 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057898 B = 0.005671 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.489749 B = 4936.597240 C = 5090.321774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.301 3.699 3 N -0.521 5.521 4 C 0.152 3.848 5 C -0.178 4.178 6 C 0.101 3.899 7 N -0.675 5.675 8 C 0.181 3.819 9 H 0.004 0.996 10 C -0.136 4.136 11 C -0.598 4.598 12 H 0.061 0.939 13 C 0.029 3.971 14 N -0.911 5.911 15 Si 1.058 2.942 16 H -0.282 1.282 17 H -0.281 1.281 18 H -0.290 1.290 19 C 0.167 3.833 20 N -0.522 5.522 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.165 0.835 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.338 0.662 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.040 0.960 31 H 0.268 0.732 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 -2.550 -10.474 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.033 3.967 3 N -0.235 5.235 4 C -0.015 4.015 5 C -0.182 4.182 6 C -0.029 4.029 7 N -0.307 5.307 8 C 0.072 3.928 9 H 0.021 0.979 10 C -0.194 4.194 11 C -0.637 4.637 12 H 0.079 0.921 13 C -0.176 4.176 14 N -0.545 5.545 15 Si 0.888 3.112 16 H -0.209 1.209 17 H -0.207 1.207 18 H -0.217 1.217 19 C 0.000 4.000 20 N -0.236 5.236 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.183 0.817 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.055 -3.243 -10.734 16.464 hybrid contribution -0.375 0.891 0.221 0.992 sum -12.430 -2.352 -10.513 16.449 Atomic orbital electron populations 1.20507 0.86049 1.03953 1.03518 1.23198 0.98103 0.83749 0.91631 1.68239 1.10054 1.30511 1.14680 1.23164 0.89389 0.98500 0.90402 1.21776 0.99176 0.95324 1.01933 1.20808 0.87403 1.01366 0.93357 1.60657 1.11183 1.49769 1.09051 1.19637 0.82859 0.92851 0.97435 0.97888 1.22026 0.98829 0.99059 0.99458 1.22156 0.94884 1.45216 1.01411 0.92128 1.25752 0.97680 0.93981 1.00188 1.70807 1.37875 1.41902 1.03949 0.83799 0.75679 0.76594 0.75111 1.20940 1.20719 1.21686 1.23140 0.89001 0.98592 0.89247 1.68264 1.10210 1.30426 1.14675 0.89969 0.89817 0.89848 0.81741 0.94469 0.90229 0.84395 0.92641 0.95640 0.94102 0.92209 0.81437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.32 36.00 0.37 -0.43 16 2 C 0.30 4.18 7.64 -157.19 -1.20 2.98 16 3 N -0.52 -7.64 10.33 -10.73 -0.11 -7.75 16 4 C 0.15 2.14 11.01 -17.20 -0.19 1.95 16 5 C -0.18 -2.56 5.43 -104.36 -0.57 -3.13 16 6 C 0.10 1.58 5.66 -4.98 -0.03 1.55 16 7 N -0.68 -13.28 6.29 -109.22 -0.69 -13.96 16 8 C 0.18 4.14 2.18 -68.86 -0.15 3.99 16 9 H 0.00 0.08 6.30 -51.93 -0.33 -0.24 16 10 C -0.14 -2.91 9.03 37.16 0.34 -2.57 16 11 C -0.60 -16.39 8.92 -34.44 -0.31 -16.70 16 12 H 0.06 1.80 7.90 -52.48 -0.41 1.38 16 13 C 0.03 0.82 5.43 -17.82 -0.10 0.72 16 14 N -0.91 -27.73 13.70 55.43 0.76 -26.97 16 15 Si 1.06 25.04 25.28 -169.99 -4.30 20.74 16 16 H -0.28 -6.38 6.82 56.52 0.39 -5.99 16 17 H -0.28 -6.16 6.35 56.52 0.36 -5.80 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 C 0.17 2.36 11.01 -17.20 -0.19 2.17 16 20 N -0.52 -7.64 10.33 -10.73 -0.11 -7.75 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 25 H 0.04 0.56 8.02 -51.93 -0.42 0.15 16 26 H 0.08 1.18 7.32 -51.93 -0.38 0.80 16 27 H 0.34 6.82 8.25 -39.29 -0.32 6.50 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.02 0.46 7.35 -51.93 -0.38 0.08 16 30 H 0.04 0.88 4.41 -51.93 -0.23 0.65 16 31 H 0.27 8.13 8.72 -40.82 -0.36 7.78 16 32 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -30.77 269.79 -6.62 -37.39 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.22 Total: 3.70 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.02 Total: -9.47 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.15 Total: -56.43 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.30 Total: 20.74 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.77 -6.62 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308665835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.886 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds