Wall clock time and date at job start Sun Mar 29 2020 22:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31795 * 119.12351 * 2 1 4 4 C 1.32337 * 120.81714 * 179.97438 * 3 2 1 5 5 C 1.38593 * 119.10633 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.80073 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.46974 * 90.00514 * 6 5 4 8 8 C 1.46904 * 110.99588 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47811 * 35.00026 * 8 7 6 10 10 C 1.52999 * 109.47076 * 274.99504 * 8 7 6 11 11 C 1.50708 * 109.47075 * 154.99953 * 8 7 6 12 12 H 1.08004 * 119.99758 * 5.37097 * 11 8 7 13 13 C 1.37871 * 120.00151 * 185.37127 * 11 8 7 14 14 N 1.31515 * 120.00255 * 184.88942 * 13 11 8 15 15 Si 1.86805 * 120.00036 * 5.16628 * 13 11 8 16 16 H 1.48497 * 109.47004 * 269.72193 * 15 13 11 17 17 H 1.48503 * 109.46903 * 29.72486 * 15 13 11 18 18 H 1.48498 * 109.46970 * 149.72467 * 15 13 11 19 19 C 1.38594 * 118.39900 * 0.28106 * 5 4 3 20 20 N 1.31798 * 119.12315 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47401 * 89.99767 * 1 2 3 22 22 H 1.08999 * 109.47313 * 210.00148 * 1 2 3 23 23 H 1.08995 * 109.47465 * 330.00026 * 1 2 3 24 24 H 1.08001 * 120.44340 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.47321 * 330.00127 * 6 5 4 26 26 H 1.09001 * 109.47365 * 210.00571 * 6 5 4 27 27 H 1.00907 * 110.99817 * 303.94941 * 7 6 5 28 28 H 1.08997 * 109.47139 * 294.98703 * 10 8 7 29 29 H 1.09000 * 109.46670 * 54.98586 * 10 8 7 30 30 H 1.09000 * 109.47265 * 174.98459 * 10 8 7 31 31 H 0.97000 * 119.99720 * 355.27241 * 14 13 11 32 32 H 1.07998 * 120.44942 * 179.72211 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1904 0.0005 5 6 4.1808 0.0000 0.0016 6 6 5.6878 0.0000 0.0028 7 7 6.1763 0.0004 1.3881 8 6 7.6448 0.0010 1.4284 9 1 8.0310 0.5904 0.5968 10 6 8.1586 -1.4358 1.3171 11 6 8.1114 0.6020 2.7294 12 1 7.3922 0.8689 3.4896 13 6 9.4564 0.8111 2.9490 14 7 9.8720 1.2451 4.1188 15 14 10.6877 0.4854 1.5825 16 1 11.1534 -0.9225 1.6611 17 1 10.0403 0.7199 0.2667 18 1 11.8479 1.3998 1.7334 19 6 3.4711 -1.1905 -0.0039 20 7 2.1484 -1.1514 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 3.9906 2.1373 0.0009 25 1 6.0516 0.8897 -0.5111 26 1 6.0516 -0.8902 -0.5105 27 1 5.8004 0.7821 1.9038 28 1 7.8465 -2.0022 2.1945 29 1 7.7484 -1.8998 0.4202 30 1 9.2470 -1.4289 1.2573 31 1 9.2283 1.4834 4.8043 32 1 3.9906 -2.1373 -0.0078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308665835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:24 Heat of formation + Delta-G solvation = 16.980172 kcal Electronic energy + Delta-G solvation = -14429.417540 eV Core-core repulsion = 12002.811836 eV Total energy + Delta-G solvation = -2426.605705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.07207 -38.11869 -35.37012 -34.71851 -33.91140 -31.51999 -29.24407 -26.91475 -25.65908 -25.35868 -22.78032 -21.58009 -19.72801 -18.76953 -17.69036 -16.83782 -16.41605 -16.05799 -15.41457 -15.25479 -14.58273 -14.36769 -14.16154 -14.04797 -13.56687 -13.40053 -13.21210 -13.16952 -12.85429 -12.29380 -11.89406 -11.84709 -11.76795 -11.57153 -10.81757 -10.66313 -10.30902 -10.24861 -9.22845 -8.73199 -6.42075 -0.14512 0.06443 1.44661 1.53848 1.70206 2.47721 2.67320 3.03145 3.08921 3.17136 3.52313 3.67215 3.81638 3.93070 4.31029 4.52074 4.57495 4.68156 4.71011 4.75456 4.82398 4.92852 5.02106 5.04643 5.06782 5.46518 5.59119 5.73241 5.93966 5.98799 6.22683 6.59489 6.69861 7.05972 7.39207 8.64382 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057898 B = 0.005671 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.489749 B = 4936.597240 C = 5090.321774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.292 3.708 3 N -0.537 5.537 4 C 0.148 3.852 5 C -0.186 4.186 6 C 0.107 3.893 7 N -0.681 5.681 8 C 0.183 3.817 9 H 0.009 0.991 10 C -0.133 4.133 11 C -0.598 4.598 12 H 0.021 0.979 13 C -0.025 4.025 14 N -0.947 5.947 15 Si 1.095 2.905 16 H -0.263 1.263 17 H -0.248 1.248 18 H -0.295 1.295 19 C 0.163 3.837 20 N -0.536 5.536 21 H 0.100 0.900 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.180 0.820 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.331 0.669 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.251 0.749 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 -3.472 -12.820 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 N -0.251 5.251 4 C -0.018 4.018 5 C -0.190 4.190 6 C -0.022 4.022 7 N -0.312 5.312 8 C 0.074 3.926 9 H 0.026 0.974 10 C -0.191 4.191 11 C -0.636 4.636 12 H 0.039 0.961 13 C -0.222 4.222 14 N -0.583 5.583 15 Si 0.917 3.083 16 H -0.189 1.189 17 H -0.172 1.172 18 H -0.222 1.222 19 C -0.003 4.003 20 N -0.251 5.251 21 H 0.118 0.882 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.197 0.803 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.148 0.852 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.634 -4.178 -13.092 18.668 hybrid contribution -0.362 1.202 0.989 1.598 sum -12.997 -2.976 -12.103 18.007 Atomic orbital electron populations 1.20651 0.83487 1.04812 1.04908 1.23975 0.99797 0.83422 0.90315 1.68331 1.10286 1.30967 1.15547 1.23477 0.89555 0.99193 0.89602 1.21631 0.98438 0.95642 1.03306 1.20806 0.88066 1.02476 0.90900 1.60599 1.09217 1.49537 1.11820 1.19500 0.84899 0.93586 0.94663 0.97397 1.21937 0.98869 0.97685 1.00600 1.22418 0.94252 1.44391 1.02551 0.96103 1.27236 1.00344 0.93297 1.01321 1.70943 1.37562 1.44815 1.05015 0.83389 0.73644 0.77448 0.73782 1.18855 1.17207 1.22206 1.23483 0.89150 0.99267 0.88354 1.68361 1.10439 1.30777 1.15481 0.88166 0.88887 0.89023 0.80336 0.93588 0.88715 0.85231 0.94180 0.91904 0.94194 0.94026 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.32 71.23 0.74 -0.67 16 2 C 0.29 7.62 7.64 138.75 1.06 8.68 16 3 N -0.54 -14.94 10.33 -187.85 -1.94 -16.89 16 4 C 0.15 3.93 11.01 84.70 0.93 4.86 16 5 C -0.19 -4.99 5.43 -19.69 -0.11 -5.09 16 6 C 0.11 3.06 5.66 85.56 0.48 3.55 16 7 N -0.68 -25.76 6.29 -499.45 -3.14 -28.90 16 8 C 0.18 8.05 2.18 44.17 0.10 8.14 16 9 H 0.01 0.37 6.30 -2.39 -0.02 0.35 16 10 C -0.13 -5.31 9.03 71.98 0.65 -4.66 16 11 C -0.60 -33.09 8.92 25.60 0.23 -32.86 16 12 H 0.02 1.28 7.90 -2.91 -0.02 1.26 16 13 C -0.02 -1.42 5.43 84.65 0.46 -0.96 16 14 N -0.95 -59.21 13.70 21.44 0.29 -58.92 16 15 Si 1.10 48.89 25.28 68.60 1.73 50.62 16 16 H -0.26 -10.88 6.82 99.48 0.68 -10.20 16 17 H -0.25 -9.68 6.35 99.48 0.63 -9.05 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 19 C 0.16 4.29 11.01 84.70 0.93 5.22 16 20 N -0.54 -14.73 10.33 -187.85 -1.94 -16.67 16 21 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 25 H 0.05 1.26 8.02 -2.39 -0.02 1.24 16 26 H 0.09 2.43 7.32 -2.39 -0.02 2.41 16 27 H 0.33 13.26 8.25 -89.69 -0.74 12.52 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.03 7.35 -2.39 -0.02 2.01 16 30 H 0.04 1.59 4.41 -2.39 -0.01 1.58 16 31 H 0.25 15.98 8.72 -92.71 -0.81 15.17 16 32 H 0.19 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -66.68 269.79 0.72 -65.96 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.24 Total: 18.59 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 5.47 Total: -13.79 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -6.73 Total: -121.38 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.73 Total: 50.62 kcal Total: -66.68 0.72 -65.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308665835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.941 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds