Wall clock time and date at job start Sun Mar 29 2020 22:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47696 * 2 1 4 4 C 1.50702 * 109.47248 * 239.99154 * 2 1 3 5 5 H 1.07991 * 120.00130 * 240.00933 * 4 2 1 6 6 C 1.37879 * 119.99521 * 60.00398 * 4 2 1 7 7 N 1.31513 * 120.00206 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99921 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47229 * 90.00119 * 8 6 4 10 10 H 1.48502 * 109.47157 * 210.00640 * 8 6 4 11 11 H 1.48506 * 109.46825 * 330.00026 * 8 6 4 12 12 N 1.46904 * 109.46600 * 120.00009 * 2 1 3 13 13 C 1.46907 * 110.99875 * 274.99495 * 12 2 1 14 14 C 1.52993 * 109.47151 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47096 * 179.97438 * 14 13 12 16 16 C 1.38395 * 119.99939 * 124.99889 * 15 14 13 17 17 N 1.32122 * 119.99798 * 180.02562 * 16 15 14 18 18 C 1.32159 * 119.99785 * 0.02562 * 17 16 15 19 19 C 1.38345 * 120.00445 * 359.97438 * 18 17 16 20 20 N 1.32118 * 120.00144 * 305.02364 * 15 14 13 21 21 H 1.09005 * 109.46586 * 59.99871 * 1 2 3 22 22 H 1.08990 * 109.47696 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47295 * 300.00872 * 1 2 3 24 24 H 0.96998 * 119.99876 * 179.97438 * 7 6 4 25 25 H 1.00898 * 111.00235 * 38.94693 * 12 2 1 26 26 H 1.09001 * 109.46469 * 59.99920 * 13 12 2 27 27 H 1.09001 * 109.46925 * 300.00042 * 13 12 2 28 28 H 1.09002 * 109.47626 * 59.99903 * 14 13 12 29 29 H 1.09000 * 109.47536 * 300.00050 * 14 13 12 30 30 H 1.07995 * 120.00061 * 359.74585 * 16 15 14 31 31 H 1.08005 * 119.99714 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.00119 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6531 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3214 -1.1207 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4868 -0.1418 -5.1122 11 1 3.6293 -1.7588 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 6 2.5960 -0.5328 3.5742 15 6 2.6611 0.4062 4.7512 16 6 2.0032 0.0889 5.9267 17 7 2.0598 0.9124 6.9583 18 6 2.7443 2.0393 6.8675 19 6 3.4020 2.3564 5.6924 20 7 3.3457 1.5325 4.6606 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 0.7097 1.1615 -3.4845 25 1 1.4494 -1.4979 1.4101 26 1 1.0870 0.6164 2.5524 27 1 2.7589 1.0461 2.1182 28 1 3.5915 -0.9263 3.3685 29 1 1.9199 -1.3566 3.8032 30 1 1.4398 -0.8296 5.9992 31 1 2.7909 2.7122 7.7110 32 1 3.9609 3.2775 5.6181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308686794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:46 Heat of formation + Delta-G solvation = 40.254756 kcal Electronic energy + Delta-G solvation = -14257.727697 eV Core-core repulsion = 11832.131254 eV Total energy + Delta-G solvation = -2425.596443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10498 -36.44189 -34.55026 -33.39221 -32.02993 -29.64293 -27.03731 -25.12659 -24.72510 -23.56264 -21.24786 -20.17525 -17.57682 -17.02951 -16.29279 -15.91534 -15.15864 -14.70093 -14.36586 -13.88818 -13.41500 -13.16133 -12.37155 -12.22697 -11.90661 -11.62884 -11.51452 -11.14763 -10.96533 -10.87791 -10.65662 -10.36763 -10.12190 -9.88415 -9.25284 -9.07851 -8.93527 -8.33617 -7.22757 -5.95529 -3.98813 0.71018 1.08660 3.34794 3.41021 3.45889 3.63534 4.00561 4.20770 4.39741 4.47633 4.71364 5.04849 5.17264 5.34831 5.36061 5.49201 5.59181 5.80260 5.92873 6.29693 6.41627 6.54700 6.71902 6.86058 7.11811 7.22063 7.39553 7.74300 7.75827 7.90959 8.29914 8.56180 8.64047 9.08390 9.66427 11.11645 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.062307 B = 0.004858 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.281583 B = 5761.925683 C = 5777.518441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.070 3.930 14 C -0.068 4.068 15 C 0.098 3.902 16 C 0.046 3.954 17 N -0.439 5.439 18 C 0.030 3.970 19 C 0.055 3.945 20 N -0.432 5.432 21 H 0.089 0.911 22 H 0.028 0.972 23 H 0.004 0.996 24 H 0.259 0.741 25 H 0.324 0.676 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 0.763 15.799 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.313 5.313 13 C -0.060 4.060 14 C -0.107 4.107 15 C -0.043 4.043 16 C -0.114 4.114 17 N -0.154 5.154 18 C -0.129 4.129 19 C -0.105 4.105 20 N -0.148 5.148 21 H 0.107 0.893 22 H 0.047 0.953 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.140 0.860 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.702 0.973 15.490 15.754 hybrid contribution -0.748 -0.145 -0.576 0.955 sum 1.954 0.828 14.914 15.064 Atomic orbital electron populations 1.22429 1.00754 0.99160 1.00450 1.19171 0.89549 0.94498 0.86443 0.94857 1.21167 1.30150 1.12394 0.89591 0.91895 1.24960 0.95378 0.95204 0.99064 1.69887 1.37449 1.23197 1.23301 0.86501 0.79238 0.79213 0.82452 1.20869 1.21400 1.19848 1.60824 1.58006 1.09063 1.03454 1.21782 0.98337 0.96134 0.89752 1.20608 1.03845 0.95338 0.90862 1.22478 0.92349 0.93219 0.96266 1.23656 0.98358 0.99816 0.89567 1.68410 1.14327 1.02957 1.29667 1.23699 0.95172 0.95018 0.99011 1.23823 0.97461 0.99436 0.89769 1.68351 1.14587 1.02497 1.29316 0.89267 0.95311 0.97742 0.93102 0.86031 0.96737 0.90652 0.88677 0.90226 0.81463 0.81646 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.39 2.57 -68.86 -0.18 5.21 16 3 H 0.03 0.95 7.80 -51.93 -0.40 0.54 16 4 C -0.49 -13.82 8.84 -34.44 -0.30 -14.12 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.48 6.23 -107.95 -0.67 -15.16 16 13 C 0.07 1.28 5.35 -3.82 -0.02 1.26 16 14 C -0.07 -0.95 5.89 -27.89 -0.16 -1.11 16 15 C 0.10 1.33 6.18 -82.41 -0.51 0.82 16 16 C 0.05 0.56 10.85 -17.37 -0.19 0.37 16 17 N -0.44 -5.41 10.50 -13.05 -0.14 -5.54 16 18 C 0.03 0.31 11.22 -17.37 -0.19 0.12 16 19 C 0.06 0.61 11.22 -17.37 -0.19 0.41 16 20 N -0.43 -6.20 10.05 -9.29 -0.09 -6.29 16 21 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 22 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 25 H 0.32 6.32 8.47 -39.29 -0.33 5.99 16 26 H 0.01 0.27 7.44 -51.93 -0.39 -0.12 16 27 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 30 H 0.17 1.55 7.95 -52.49 -0.42 1.14 16 31 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -31.18 274.78 -6.97 -38.15 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.30 Total: 2.89 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.52 Total: -9.40 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.28 Total: -52.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.18 -6.97 -38.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308686794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.403 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds