Wall clock time and date at job start Sun Mar 29 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47648 * 2 1 4 4 C 1.50705 * 109.46923 * 120.00551 * 2 1 3 5 5 H 1.07995 * 120.00153 * 120.00175 * 4 2 1 6 6 C 1.37872 * 119.99631 * 299.99243 * 4 2 1 7 7 N 1.31513 * 120.00374 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00181 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47031 * 89.99848 * 8 6 4 10 10 H 1.48501 * 109.47458 * 210.00734 * 8 6 4 11 11 H 1.48504 * 109.46783 * 330.00450 * 8 6 4 12 12 N 1.46900 * 109.46967 * 239.99942 * 2 1 3 13 13 C 1.46896 * 110.99883 * 85.00113 * 12 2 1 14 14 C 1.52999 * 109.47426 * 179.97438 * 13 12 2 15 15 C 1.50696 * 109.47650 * 180.02562 * 14 13 12 16 16 C 1.38387 * 120.00645 * 124.98014 * 15 14 13 17 17 N 1.32127 * 119.99994 * 179.76858 * 16 15 14 18 18 C 1.32149 * 119.99872 * 0.50887 * 17 16 15 19 19 C 1.38346 * 120.00371 * 359.48627 * 18 17 16 20 20 N 1.32127 * 120.00024 * 304.99714 * 15 14 13 21 21 H 1.09004 * 109.47072 * 300.00156 * 1 2 3 22 22 H 1.09002 * 109.46883 * 59.99520 * 1 2 3 23 23 H 1.08994 * 109.47648 * 179.97438 * 1 2 3 24 24 H 0.96997 * 120.00276 * 179.97438 * 7 6 4 25 25 H 1.00898 * 111.00183 * 208.95958 * 12 2 1 26 26 H 1.09002 * 109.46969 * 60.00033 * 13 12 2 27 27 H 1.09002 * 109.47682 * 299.99903 * 13 12 2 28 28 H 1.09002 * 109.46958 * 60.00102 * 14 13 12 29 29 H 1.09001 * 109.47119 * 300.00887 * 14 13 12 30 30 H 1.07999 * 119.99913 * 0.02562 * 16 15 14 31 31 H 1.08002 * 120.00163 * 179.77166 * 18 17 16 32 32 H 1.07999 * 120.00349 * 180.27731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6304 -0.5443 4.4118 10 1 1.3443 -0.9492 5.1122 11 1 2.4878 -2.5655 3.7121 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3468 14 6 2.5961 -0.5328 -3.5742 15 6 2.6612 0.4060 -4.7511 16 6 3.8473 0.5631 -5.4464 17 7 3.9030 1.3829 -6.4812 18 6 2.8286 2.0603 -6.8459 19 6 1.6427 1.9033 -6.1510 20 7 1.5857 1.0796 -5.1192 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7083 1.1608 3.4844 25 1 2.9172 -1.1206 -1.0288 26 1 2.7588 1.0461 -2.1181 27 1 1.0870 0.6164 -2.5525 28 1 1.9200 -1.3566 -3.8031 29 1 3.5915 -0.9263 -3.3683 30 1 4.7264 0.0125 -5.1458 31 1 2.8751 2.7332 -7.6895 32 1 0.7635 2.4536 -6.4519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308686795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:49 Heat of formation + Delta-G solvation = 39.099073 kcal Electronic energy + Delta-G solvation = -14258.227505 eV Core-core repulsion = 11832.580948 eV Total energy + Delta-G solvation = -2425.646557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10142 -36.35882 -34.52958 -33.39957 -32.02943 -29.61286 -27.15098 -25.23569 -24.70201 -23.56946 -21.26152 -19.75701 -17.57632 -17.02847 -16.49463 -15.89190 -15.14144 -14.79980 -14.32580 -13.92455 -13.30568 -13.20118 -12.55798 -12.16261 -12.00480 -11.59930 -11.40930 -11.08335 -10.95409 -10.74111 -10.68093 -10.21953 -10.09008 -9.96953 -9.22773 -9.05629 -8.79620 -8.46652 -7.27625 -6.01452 -4.08220 0.71428 1.08925 3.29963 3.36672 3.40463 3.63835 4.00891 4.21214 4.38593 4.43520 4.71617 5.05247 5.17467 5.30000 5.35488 5.49651 5.60486 5.81608 5.94244 6.30623 6.42672 6.55758 6.92971 7.18195 7.22124 7.26624 7.52545 7.74579 7.78925 7.91707 8.29316 8.39286 8.68035 9.02519 9.57733 11.04908 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060787 B = 0.004951 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.516212 B = 5654.347651 C = 5867.882072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.689 5.689 13 C 0.071 3.929 14 C -0.068 4.068 15 C 0.097 3.903 16 C 0.047 3.953 17 N -0.439 5.439 18 C 0.031 3.969 19 C 0.055 3.945 20 N -0.433 5.433 21 H 0.080 0.920 22 H 0.005 0.995 23 H 0.031 0.969 24 H 0.261 0.739 25 H 0.329 0.671 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 1.082 -15.309 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.320 5.320 13 C -0.060 4.060 14 C -0.106 4.106 15 C -0.043 4.043 16 C -0.113 4.113 17 N -0.154 5.154 18 C -0.129 4.129 19 C -0.105 4.105 20 N -0.148 5.148 21 H 0.098 0.902 22 H 0.024 0.976 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.186 0.814 31 H 0.184 0.816 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.617 0.957 -15.333 15.584 hybrid contribution 1.021 0.278 1.016 1.467 sum 3.638 1.235 -14.317 14.823 Atomic orbital electron populations 1.21706 0.97813 0.99352 0.99391 1.19098 0.92716 0.92271 0.85487 0.98261 1.21268 1.31470 1.12516 0.90461 0.92172 1.24928 0.95041 0.95012 0.99066 1.69903 1.36577 1.22956 1.23449 0.86519 0.78443 0.80070 0.82487 1.20787 1.21203 1.19813 1.60739 1.31888 1.33205 1.06141 1.21793 1.00472 0.93633 0.90095 1.20608 1.02987 0.96367 0.90675 1.22477 0.89825 0.95282 0.96740 1.23662 0.98752 0.96586 0.92335 1.68410 1.29809 1.04418 1.12714 1.23696 0.89899 0.98683 1.00601 1.23817 0.99133 0.95683 0.91898 1.68346 1.29789 1.04429 1.12242 0.90170 0.97600 0.94948 0.92932 0.85419 0.96697 0.90698 0.88772 0.90142 0.81429 0.81650 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.47 2.60 -68.86 -0.18 5.29 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.31 8.59 -34.44 -0.30 -14.61 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.69 -14.73 6.30 -107.95 -0.68 -15.41 16 13 C 0.07 1.30 5.35 -3.83 -0.02 1.27 16 14 C -0.07 -0.95 5.89 -27.89 -0.16 -1.12 16 15 C 0.10 1.33 6.18 -82.41 -0.51 0.82 16 16 C 0.05 0.57 10.85 -17.37 -0.19 0.38 16 17 N -0.44 -5.45 10.50 -13.06 -0.14 -5.59 16 18 C 0.03 0.32 11.22 -17.38 -0.20 0.12 16 19 C 0.05 0.60 11.22 -17.37 -0.20 0.41 16 20 N -0.43 -6.20 10.06 -9.29 -0.09 -6.29 16 21 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 22 H 0.00 0.12 7.45 -51.93 -0.39 -0.27 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.33 6.67 8.22 -39.29 -0.32 6.35 16 26 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 27 H 0.07 1.50 7.26 -51.93 -0.38 1.12 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 0.95 7.89 -51.93 -0.41 0.55 16 30 H 0.17 1.59 7.95 -52.49 -0.42 1.17 16 31 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 274.46 15.07 4.14 4.14 Total: -1.00 -31.10 274.46 -6.95 -38.05 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.28 Total: 2.58 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.50 Total: -8.66 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.28 Total: -52.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.10 -6.95 -38.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308686795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.149 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds