Wall clock time and date at job start Sun Mar 29 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47648 * 2 1 4 4 C 1.50705 * 109.46923 * 120.00551 * 2 1 3 5 5 H 1.07995 * 120.00153 * 120.00175 * 4 2 1 6 6 C 1.37872 * 119.99631 * 299.99243 * 4 2 1 7 7 N 1.31513 * 120.00374 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00181 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47031 * 89.99848 * 8 6 4 10 10 H 1.48501 * 109.47458 * 210.00734 * 8 6 4 11 11 H 1.48504 * 109.46783 * 330.00450 * 8 6 4 12 12 N 1.46900 * 109.46967 * 239.99942 * 2 1 3 13 13 C 1.46896 * 110.99883 * 85.00113 * 12 2 1 14 14 C 1.52999 * 109.47426 * 179.97438 * 13 12 2 15 15 C 1.50696 * 109.47650 * 180.02562 * 14 13 12 16 16 C 1.38387 * 120.00645 * 124.98014 * 15 14 13 17 17 N 1.32127 * 119.99994 * 179.76858 * 16 15 14 18 18 C 1.32149 * 119.99872 * 0.50887 * 17 16 15 19 19 C 1.38346 * 120.00371 * 359.48627 * 18 17 16 20 20 N 1.32127 * 120.00024 * 304.99714 * 15 14 13 21 21 H 1.09004 * 109.47072 * 300.00156 * 1 2 3 22 22 H 1.09002 * 109.46883 * 59.99520 * 1 2 3 23 23 H 1.08994 * 109.47648 * 179.97438 * 1 2 3 24 24 H 0.96997 * 120.00276 * 179.97438 * 7 6 4 25 25 H 1.00898 * 111.00183 * 208.95958 * 12 2 1 26 26 H 1.09002 * 109.46969 * 60.00033 * 13 12 2 27 27 H 1.09002 * 109.47682 * 299.99903 * 13 12 2 28 28 H 1.09002 * 109.46958 * 60.00102 * 14 13 12 29 29 H 1.09001 * 109.47119 * 300.00887 * 14 13 12 30 30 H 1.07999 * 119.99913 * 0.02562 * 16 15 14 31 31 H 1.08002 * 120.00163 * 179.77166 * 18 17 16 32 32 H 1.07999 * 120.00349 * 180.27731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6304 -0.5443 4.4118 10 1 1.3443 -0.9492 5.1122 11 1 2.4878 -2.5655 3.7121 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3468 14 6 2.5961 -0.5328 -3.5742 15 6 2.6612 0.4060 -4.7511 16 6 3.8473 0.5631 -5.4464 17 7 3.9030 1.3829 -6.4812 18 6 2.8286 2.0603 -6.8459 19 6 1.6427 1.9033 -6.1510 20 7 1.5857 1.0796 -5.1192 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7083 1.1608 3.4844 25 1 2.9172 -1.1206 -1.0288 26 1 2.7588 1.0461 -2.1181 27 1 1.0870 0.6164 -2.5525 28 1 1.9200 -1.3566 -3.8031 29 1 3.5915 -0.9263 -3.3683 30 1 4.7264 0.0125 -5.1458 31 1 2.8751 2.7332 -7.6895 32 1 0.7635 2.4536 -6.4519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308686795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:48 Heat of formation + Delta-G solvation = 16.660298 kcal Electronic energy + Delta-G solvation = -14259.200524 eV Core-core repulsion = 11832.580948 eV Total energy + Delta-G solvation = -2426.619575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.00622 -38.05488 -35.77046 -34.78203 -33.57193 -31.15799 -28.68337 -27.30353 -25.69845 -24.76374 -22.55314 -21.73898 -18.59768 -18.45359 -17.83713 -17.06240 -16.70330 -16.31059 -15.71082 -15.29376 -14.97856 -14.45907 -14.07780 -13.71064 -13.35563 -13.11410 -12.83952 -12.62653 -12.52894 -12.31082 -12.28604 -12.18819 -11.91491 -11.81030 -10.90407 -10.57759 -10.13697 -9.98006 -9.09881 -8.13057 -6.28066 -0.16024 0.17707 1.43463 1.44827 1.55758 2.42207 2.74051 3.11669 3.16109 3.38843 3.48257 3.68944 4.02362 4.10513 4.35873 4.43324 4.48193 4.60816 4.69363 4.80806 5.06452 5.09699 5.12458 5.21111 5.46228 5.47139 5.66832 5.84555 6.20834 6.34678 6.45275 6.76231 6.85661 7.01430 7.42747 8.93036 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060787 B = 0.004951 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.516212 B = 5654.347651 C = 5867.882072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.036 1.036 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.265 1.265 12 N -0.684 5.684 13 C 0.078 3.922 14 C -0.054 4.054 15 C 0.076 3.924 16 C 0.046 3.954 17 N -0.459 5.459 18 C 0.041 3.959 19 C 0.049 3.951 20 N -0.469 5.469 21 H 0.056 0.944 22 H 0.017 0.983 23 H 0.030 0.970 24 H 0.262 0.738 25 H 0.337 0.663 26 H 0.003 0.997 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.191 0.809 31 H 0.205 0.795 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 0.612 -16.279 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.018 1.018 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.792 3.208 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.189 1.189 12 N -0.315 5.315 13 C -0.052 4.052 14 C -0.092 4.092 15 C -0.064 4.064 16 C -0.113 4.113 17 N -0.173 5.173 18 C -0.118 4.118 19 C -0.111 4.111 20 N -0.185 5.185 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.155 0.845 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.208 0.792 31 H 0.221 0.779 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.545 0.466 -16.316 16.703 hybrid contribution 0.705 0.518 1.201 1.486 sum 4.249 0.984 -15.114 15.731 Atomic orbital electron populations 1.21537 0.97878 0.98920 0.98794 1.18911 0.92718 0.90634 0.87133 1.01819 1.21603 1.31757 1.12811 0.91411 0.91743 1.25794 0.95113 0.95678 1.02257 1.70041 1.37500 1.24258 1.24208 0.85428 0.77909 0.79126 0.78379 1.20068 1.20982 1.18942 1.60628 1.32408 1.33227 1.05268 1.21708 0.99341 0.93399 0.90761 1.20431 1.04007 0.95889 0.88915 1.22363 0.90591 0.96185 0.97297 1.23941 0.98834 0.96471 0.92005 1.68500 1.30762 1.05071 1.13005 1.24336 0.88933 0.97817 1.00761 1.24369 1.00712 0.95063 0.90951 1.68279 1.30709 1.05632 1.13853 0.92487 0.96428 0.95082 0.92845 0.84547 0.97863 0.92712 0.88998 0.87658 0.79229 0.77870 0.78504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.89 9.19 71.98 0.66 -5.23 16 2 C 0.21 11.30 2.60 44.17 0.11 11.41 16 3 H -0.04 -2.10 7.80 -2.39 -0.02 -2.12 16 4 C -0.54 -29.79 8.59 25.60 0.22 -29.57 16 5 H 0.06 3.44 7.62 -2.91 -0.02 3.41 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.68 -29.33 6.30 -495.46 -3.12 -32.46 16 13 C 0.08 2.89 5.35 86.30 0.46 3.35 16 14 C -0.05 -1.47 5.89 29.85 0.18 -1.30 16 15 C 0.08 2.00 6.18 42.55 0.26 2.26 16 16 C 0.05 1.05 10.85 84.68 0.92 1.97 16 17 N -0.46 -10.39 10.50 -195.22 -2.05 -12.44 16 18 C 0.04 0.74 11.22 84.67 0.95 1.69 16 19 C 0.05 0.99 11.22 84.67 0.95 1.94 16 20 N -0.47 -13.06 10.06 -183.30 -1.84 -14.91 16 21 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 22 H 0.02 0.82 7.45 -2.39 -0.02 0.80 16 23 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.34 13.49 8.22 -89.70 -0.74 12.75 16 26 H 0.00 0.12 8.06 -2.39 -0.02 0.11 16 27 H 0.05 2.24 7.26 -2.39 -0.02 2.22 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.11 2.31 7.89 -2.39 -0.02 2.29 16 30 H 0.19 3.18 7.95 -2.91 -0.02 3.16 16 31 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -67.17 274.46 0.79 -66.38 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.38 Total: 14.07 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.16 Total: -12.44 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -6.77 Total: -113.52 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -67.17 0.79 -66.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308686795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.038 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds