Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99779 * 359.50247 * 4 3 2 6 6 C 1.38211 * 120.00163 * 0.44980 * 5 4 3 7 7 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00262 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46872 * 324.99410 * 8 7 2 10 10 C 1.52996 * 109.47235 * 84.99426 * 8 7 2 11 11 O 1.42900 * 109.47144 * 55.00307 * 10 8 7 12 12 N 1.46504 * 109.46807 * 204.99936 * 8 7 2 13 13 C 1.36936 * 119.99763 * 154.99709 * 12 8 7 14 14 H 1.08001 * 120.00165 * 359.97438 * 13 12 8 15 15 C 1.38810 * 119.99953 * 179.97438 * 13 12 8 16 16 N 1.31624 * 119.99977 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99985 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46866 * 89.99871 * 17 15 13 19 19 H 1.48500 * 109.47281 * 209.99941 * 17 15 13 20 20 H 1.48506 * 109.47229 * 329.99834 * 17 15 13 21 21 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 22 22 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 23 23 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 24 24 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 25 25 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 26 26 H 1.08004 * 120.00379 * 180.28376 * 5 4 3 27 27 H 1.08002 * 120.00349 * 179.83142 * 6 5 4 28 28 H 1.08999 * 109.46969 * 175.00132 * 10 8 7 29 29 H 1.09002 * 109.47403 * 295.00102 * 10 8 7 30 30 H 0.96697 * 113.99660 * 179.97438 * 11 10 8 31 31 H 0.96990 * 119.99759 * 334.98980 * 12 8 7 32 32 H 0.96996 * 119.99393 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 0.0006 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.5340 -2.3954 0.5915 10 6 1.0799 -2.8818 -1.4348 11 8 2.2632 -2.9079 -2.2356 12 7 2.2847 -3.5505 0.5858 13 6 1.7061 -4.6496 1.1625 14 1 0.6305 -4.7433 1.1871 15 6 2.5022 -5.6432 1.7155 16 7 1.9461 -6.6999 2.2693 17 14 4.3626 -5.4808 1.6736 18 1 4.8255 -4.7755 2.8957 19 1 4.9764 -6.8319 1.6194 20 1 4.7650 -4.7058 0.4724 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8900 0.5137 24 1 1.6584 2.1326 -0.0005 25 1 4.1205 2.1325 -0.0099 26 1 5.3517 -0.0003 0.0001 27 1 4.1205 -2.1324 0.0018 28 1 0.6138 -3.8671 -1.4431 29 1 0.3836 -2.1472 -1.8393 30 1 2.1070 -3.1423 -3.1606 31 1 3.2506 -3.4662 0.5640 32 1 2.5024 -7.3940 2.6560 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308714583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = -9.531883 kcal Electronic energy + Delta-G solvation = -15152.274213 eV Core-core repulsion = 12692.226108 eV Total energy + Delta-G solvation = -2460.048105 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.42035 -36.57261 -34.48184 -32.74704 -31.79002 -29.93806 -27.66678 -26.57483 -23.62773 -22.62117 -20.90095 -19.67879 -17.93219 -16.81055 -15.98931 -15.26401 -14.71299 -14.26364 -14.19415 -13.68590 -13.43044 -13.06115 -12.74406 -12.51537 -12.27280 -11.85280 -11.68458 -11.42838 -11.07607 -10.84232 -10.59767 -10.41186 -10.00561 -9.57744 -9.38013 -8.97965 -8.39689 -8.18741 -7.27239 -5.77794 -3.12615 1.71672 1.79212 3.40193 3.44568 3.46835 4.13594 4.60508 4.85652 5.10832 5.17537 5.27585 5.32891 5.41985 5.50431 5.56007 5.77595 5.81290 5.93262 5.98732 6.06389 6.21825 6.27920 6.42074 6.47593 6.54719 6.80509 6.90730 7.12547 7.38908 7.96675 8.17923 8.41776 9.19783 9.92674 10.13267 11.40269 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029911 B = 0.009732 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.897205 B = 2876.496319 C = 3206.765869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.131 4.131 5 C -0.129 4.129 6 C -0.092 4.092 7 C -0.060 4.060 8 C 0.215 3.785 9 H 0.082 0.918 10 C 0.063 3.937 11 O -0.561 6.561 12 N -0.739 5.739 13 C -0.246 4.246 14 H 0.091 0.909 15 C 0.008 3.992 16 N -0.933 5.933 17 Si 0.879 3.121 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.274 1.274 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.052 0.948 29 H 0.029 0.971 30 H 0.363 0.637 31 H 0.365 0.635 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 14.318 -7.219 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.110 4.110 7 C -0.061 4.061 8 C 0.105 3.895 9 H 0.099 0.901 10 C -0.018 4.018 11 O -0.364 6.364 12 N -0.383 5.383 13 C -0.375 4.375 14 H 0.108 0.892 15 C -0.188 4.188 16 N -0.580 5.580 17 Si 0.709 3.291 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.200 1.200 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.133 0.867 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.207 0.793 31 H 0.201 0.799 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.160 14.288 -6.521 15.707 hybrid contribution 1.128 -0.235 -0.554 1.278 sum 0.967 14.053 -7.075 15.764 Atomic orbital electron populations 1.20857 0.91632 1.02875 1.01977 1.19690 0.95828 0.92582 1.00939 1.20863 0.94178 0.96969 1.02312 1.20966 0.94291 0.97544 1.02113 1.21073 0.99476 0.92645 1.01529 1.20955 0.94153 0.97811 0.98093 1.20045 0.94036 0.94676 0.97330 1.19301 0.94075 0.85101 0.90987 0.90096 1.22999 0.86450 0.99178 0.93170 1.86560 1.33386 1.93071 1.23351 1.42837 1.04313 1.21508 1.69636 1.19064 0.93657 0.95583 1.29244 0.89155 1.24623 0.97335 0.96548 1.00325 1.69700 1.34218 1.10359 1.43769 0.86616 0.87410 0.77044 0.77982 1.20942 1.21645 1.20048 0.91503 0.90841 0.91966 0.86709 0.86814 0.86698 0.86193 0.93004 0.95298 0.79278 0.79934 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.40 36.01 0.34 -1.15 16 2 C -0.09 -1.41 5.88 -104.62 -0.62 -2.02 16 3 C -0.13 -1.76 9.70 -39.58 -0.38 -2.15 16 4 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 5 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 6 C -0.09 -1.71 8.98 -39.58 -0.36 -2.07 16 7 C -0.06 -1.11 4.65 -104.62 -0.49 -1.59 16 8 C 0.22 4.33 2.40 -69.08 -0.17 4.16 16 9 H 0.08 1.60 6.10 -51.93 -0.32 1.28 16 10 C 0.06 1.12 6.85 37.16 0.25 1.38 16 11 O -0.56 -10.05 12.87 -35.23 -0.45 -10.51 16 12 N -0.74 -18.11 4.79 -54.55 -0.26 -18.37 16 13 C -0.25 -6.97 10.41 -15.06 -0.16 -7.13 16 14 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 15 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 16 N -0.93 -29.41 13.97 55.49 0.78 -28.63 16 17 Si 0.88 22.68 27.74 -169.99 -4.71 17.96 16 18 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.27 -6.80 6.52 56.52 0.37 -6.43 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 0.98 6.03 -51.93 -0.31 0.67 16 23 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 24 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 26 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 27 H 0.12 2.43 6.07 -52.49 -0.32 2.11 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.44 7.93 -51.93 -0.41 0.02 16 30 H 0.36 4.70 9.12 45.56 0.42 5.11 16 31 H 0.37 9.02 3.26 -40.82 -0.13 8.88 16 32 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 267.39 15.07 4.03 4.03 Total: -1.00 -32.88 267.39 -6.29 -39.18 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -3.20 Total: 11.45 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.46 Total: -15.11 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.51 Total: -47.00 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.45 Total: -10.51 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.88 -6.29 -39.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308714583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.644 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds