Wall clock time and date at job start Sun Mar 29 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38254 * 119.99888 * 2 1 4 4 C 1.38214 * 120.00252 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99840 * 0.02562 * 4 3 2 6 6 C 1.38219 * 119.99774 * 359.73988 * 5 4 3 7 7 C 1.38205 * 119.99991 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00438 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47104 * 33.66148 * 8 7 2 10 10 C 1.52996 * 109.47407 * 273.66063 * 8 7 2 11 11 O 1.42901 * 109.47334 * 304.99989 * 10 8 7 12 12 N 1.46500 * 109.47299 * 153.65820 * 8 7 2 13 13 C 1.36936 * 119.99995 * 209.29443 * 12 8 7 14 14 H 1.07994 * 120.00287 * 0.02562 * 13 12 8 15 15 C 1.38817 * 119.99730 * 180.02562 * 13 12 8 16 16 N 1.31616 * 120.00266 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99724 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47351 * 60.00068 * 17 15 13 19 19 H 1.48508 * 109.47161 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47480 * 299.99929 * 17 15 13 21 21 H 1.09003 * 109.46883 * 270.01854 * 1 2 3 22 22 H 1.08998 * 109.46881 * 30.02290 * 1 2 3 23 23 H 1.09004 * 109.46647 * 150.01981 * 1 2 3 24 24 H 1.08005 * 119.99858 * 0.02562 * 3 2 1 25 25 H 1.07993 * 120.00142 * 180.02562 * 4 3 2 26 26 H 1.07991 * 120.00124 * 180.02562 * 5 4 3 27 27 H 1.07999 * 119.99925 * 180.27859 * 6 5 4 28 28 H 1.08998 * 109.47205 * 184.99401 * 10 8 7 29 29 H 1.09006 * 109.47005 * 64.99968 * 10 8 7 30 30 H 0.96698 * 114.00127 * 179.97438 * 11 10 8 31 31 H 0.96996 * 119.99889 * 29.29862 * 12 8 7 32 32 H 0.96994 * 120.00145 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0054 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 1 0.5225 -2.3892 -0.5695 10 6 1.1094 -2.8974 1.4400 11 8 2.3087 -2.9319 2.2162 12 7 2.2728 -3.5439 -0.6118 13 6 1.6819 -4.5923 -1.2652 14 1 0.6054 -4.6508 -1.3296 15 6 2.4666 -5.5798 -1.8450 16 7 3.7785 -5.5082 -1.7670 17 14 1.6605 -7.0094 -2.7370 18 1 0.8437 -6.4924 -3.8643 19 1 2.7096 -7.9195 -3.2631 20 1 0.7875 -7.7528 -1.7933 21 1 -0.3633 0.0003 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6583 2.1327 0.0004 25 1 4.1204 2.1327 0.0010 26 1 5.3517 0.0001 0.0014 27 1 4.1207 -2.1322 0.0100 28 1 0.6436 -3.8828 1.4470 29 1 0.4214 -2.1673 1.8664 30 1 2.1712 -3.1756 3.1418 31 1 3.2396 -3.4912 -0.5543 32 1 4.3267 -6.1984 -2.1718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308714584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:26 Heat of formation + Delta-G solvation = -13.644126 kcal Electronic energy + Delta-G solvation = -15073.985961 eV Core-core repulsion = 12613.759536 eV Total energy + Delta-G solvation = -2460.226425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.24540 -36.42899 -34.31482 -32.63602 -31.66415 -29.52545 -27.29445 -26.44507 -23.78825 -22.59864 -20.85968 -19.52597 -17.53298 -16.55000 -15.91730 -15.10776 -14.59854 -14.25616 -14.02451 -13.56250 -13.23671 -13.13803 -12.60015 -12.41632 -12.10230 -11.70790 -11.51082 -11.21047 -10.88639 -10.78303 -10.49867 -10.23698 -10.02136 -9.68015 -9.26436 -8.94102 -8.22886 -8.03975 -6.95742 -5.75166 -3.03816 1.86820 1.96079 3.44112 3.48239 3.49613 4.29730 4.58966 4.98102 5.23319 5.30936 5.42264 5.52291 5.59075 5.65721 5.67814 5.86950 5.92413 6.04287 6.06877 6.22300 6.40916 6.43877 6.52669 6.62354 6.69318 6.95133 7.09297 7.31984 7.56305 7.67859 8.27910 8.43267 9.54449 10.11808 10.47590 11.47351 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.008246 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.959854 B = 3394.927688 C = 3550.672031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.133 4.133 5 C -0.130 4.130 6 C -0.082 4.082 7 C -0.060 4.060 8 C 0.209 3.791 9 H 0.075 0.925 10 C 0.063 3.937 11 O -0.557 6.557 12 N -0.713 5.713 13 C -0.245 4.245 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.929 5.929 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.046 0.954 29 H 0.025 0.975 30 H 0.361 0.639 31 H 0.388 0.612 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 10.927 5.898 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.061 4.061 8 C 0.099 3.901 9 H 0.092 0.908 10 C -0.018 4.018 11 O -0.359 6.359 12 N -0.355 5.355 13 C -0.376 4.376 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.577 5.577 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.146 0.854 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.205 0.795 31 H 0.225 0.775 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.260 10.949 5.198 12.847 hybrid contribution -0.305 -0.996 0.093 1.045 sum -4.564 9.953 5.290 12.161 Atomic orbital electron populations 1.20835 0.91925 1.02623 1.01774 1.19679 0.95639 0.92745 1.01406 1.20817 0.94195 0.96838 1.02877 1.20948 0.94252 0.97535 1.02381 1.21092 0.99484 0.92671 1.01595 1.21043 0.94101 0.98080 0.96769 1.20103 0.94211 0.94590 0.97204 1.19322 0.94261 0.85966 0.90589 0.90761 1.23056 0.86118 0.98622 0.94014 1.86597 1.32760 1.92676 1.23912 1.42479 1.05680 1.23519 1.63871 1.19211 0.91497 0.99878 1.27005 0.91240 1.24738 0.95387 0.99131 1.01445 1.69656 1.02829 1.35644 1.49566 0.86271 0.77969 0.82346 0.79582 1.21267 1.21664 1.21306 0.91691 0.92144 0.91042 0.86978 0.87020 0.86744 0.85397 0.93590 0.95704 0.79530 0.77502 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.57 36.01 0.34 -1.21 16 2 C -0.09 -1.57 5.88 -104.62 -0.62 -2.18 16 3 C -0.13 -1.95 9.70 -39.58 -0.38 -2.34 16 4 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 5 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 6 C -0.08 -1.63 8.90 -39.58 -0.35 -1.98 16 7 C -0.06 -1.17 4.67 -104.63 -0.49 -1.66 16 8 C 0.21 4.38 2.44 -69.09 -0.17 4.21 16 9 H 0.07 1.51 6.01 -51.93 -0.31 1.20 16 10 C 0.06 1.17 6.87 37.16 0.26 1.42 16 11 O -0.56 -10.48 12.81 -35.23 -0.45 -10.94 16 12 N -0.71 -18.44 4.94 -54.55 -0.27 -18.71 16 13 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 17 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 23 H 0.07 1.00 6.00 -51.93 -0.31 0.69 16 24 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 25 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.13 2.83 6.13 -52.49 -0.32 2.51 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.36 4.96 9.12 45.56 0.42 5.38 16 31 H 0.39 10.75 5.52 -40.82 -0.23 10.53 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 270.81 15.07 4.08 4.08 Total: -1.00 -32.05 270.81 -6.64 -38.70 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -3.26 Total: 13.27 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.45 Total: -16.16 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.45 Total: -46.39 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.45 Total: -10.94 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.05 -6.64 -38.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308714584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.055 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds