Wall clock time and date at job start Sun Mar 29 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38254 * 119.99888 * 2 1 4 4 C 1.38214 * 120.00252 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99840 * 0.02562 * 4 3 2 6 6 C 1.38219 * 119.99774 * 359.73988 * 5 4 3 7 7 C 1.38205 * 119.99991 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00438 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47104 * 33.66148 * 8 7 2 10 10 C 1.52996 * 109.47407 * 273.66063 * 8 7 2 11 11 O 1.42901 * 109.47334 * 304.99989 * 10 8 7 12 12 N 1.46500 * 109.47299 * 153.65820 * 8 7 2 13 13 C 1.36936 * 119.99995 * 209.29443 * 12 8 7 14 14 H 1.07994 * 120.00287 * 0.02562 * 13 12 8 15 15 C 1.38817 * 119.99730 * 180.02562 * 13 12 8 16 16 N 1.31616 * 120.00266 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99724 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47351 * 60.00068 * 17 15 13 19 19 H 1.48508 * 109.47161 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47480 * 299.99929 * 17 15 13 21 21 H 1.09003 * 109.46883 * 270.01854 * 1 2 3 22 22 H 1.08998 * 109.46881 * 30.02290 * 1 2 3 23 23 H 1.09004 * 109.46647 * 150.01981 * 1 2 3 24 24 H 1.08005 * 119.99858 * 0.02562 * 3 2 1 25 25 H 1.07993 * 120.00142 * 180.02562 * 4 3 2 26 26 H 1.07991 * 120.00124 * 180.02562 * 5 4 3 27 27 H 1.07999 * 119.99925 * 180.27859 * 6 5 4 28 28 H 1.08998 * 109.47205 * 184.99401 * 10 8 7 29 29 H 1.09006 * 109.47005 * 64.99968 * 10 8 7 30 30 H 0.96698 * 114.00127 * 179.97438 * 11 10 8 31 31 H 0.96996 * 119.99889 * 29.29862 * 12 8 7 32 32 H 0.96994 * 120.00145 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0054 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 1 0.5225 -2.3892 -0.5695 10 6 1.1094 -2.8974 1.4400 11 8 2.3087 -2.9319 2.2162 12 7 2.2728 -3.5439 -0.6118 13 6 1.6819 -4.5923 -1.2652 14 1 0.6054 -4.6508 -1.3296 15 6 2.4666 -5.5798 -1.8450 16 7 3.7785 -5.5082 -1.7670 17 14 1.6605 -7.0094 -2.7370 18 1 0.8437 -6.4924 -3.8643 19 1 2.7096 -7.9195 -3.2631 20 1 0.7875 -7.7528 -1.7933 21 1 -0.3633 0.0003 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6583 2.1327 0.0004 25 1 4.1204 2.1327 0.0010 26 1 5.3517 0.0001 0.0014 27 1 4.1207 -2.1322 0.0100 28 1 0.6436 -3.8828 1.4470 29 1 0.4214 -2.1673 1.8664 30 1 2.1712 -3.1756 3.1418 31 1 3.2396 -3.4912 -0.5543 32 1 4.3267 -6.1984 -2.1718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308714584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:26 Heat of formation + Delta-G solvation = -36.464410 kcal Electronic energy + Delta-G solvation = -15074.975523 eV Core-core repulsion = 12613.759536 eV Total energy + Delta-G solvation = -2461.215987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60334 -37.92816 -36.09457 -34.10372 -33.30765 -31.18170 -28.91810 -27.63530 -25.77463 -24.04710 -22.22937 -21.00860 -19.40589 -18.15676 -17.41710 -16.70708 -16.03745 -15.86648 -15.52985 -15.10302 -14.88768 -14.61297 -13.96046 -13.85471 -13.41732 -12.98341 -12.91431 -12.88952 -12.78405 -12.46287 -12.17280 -11.96981 -11.58073 -11.48049 -10.99677 -10.72569 -9.54528 -9.36642 -9.00896 -7.93216 -5.22176 0.57697 0.64275 1.45816 1.49720 1.55619 2.55645 2.98712 3.39413 3.58038 3.94096 4.00539 4.11239 4.18916 4.29818 4.49618 4.50380 4.68062 4.70922 4.87650 4.90676 5.00835 5.02292 5.10548 5.30458 5.40233 5.48426 5.68814 5.76489 5.94294 6.27403 6.27956 7.05051 7.33654 8.09782 8.34513 9.30613 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.008246 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.959854 B = 3394.927688 C = 3550.672031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.126 4.126 5 C -0.141 4.141 6 C -0.112 4.112 7 C -0.084 4.084 8 C 0.201 3.799 9 H 0.078 0.922 10 C 0.071 3.929 11 O -0.578 6.578 12 N -0.730 5.730 13 C -0.244 4.244 14 H 0.080 0.920 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.976 3.024 18 H -0.277 1.277 19 H -0.297 1.297 20 H -0.276 1.276 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.128 0.872 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.382 0.618 31 H 0.374 0.626 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 13.054 6.295 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.130 4.130 7 C -0.085 4.085 8 C 0.093 3.907 9 H 0.096 0.904 10 C -0.009 4.009 11 O -0.384 6.384 12 N -0.371 5.371 13 C -0.376 4.376 14 H 0.098 0.902 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.805 3.195 18 H -0.203 1.203 19 H -0.224 1.224 20 H -0.202 1.202 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.079 0.921 24 H 0.168 0.832 25 H 0.166 0.834 26 H 0.146 0.854 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.208 0.792 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.114 13.106 5.634 15.521 hybrid contribution 0.243 -1.509 0.043 1.529 sum -5.871 11.597 5.677 14.184 Atomic orbital electron populations 1.20894 0.89613 1.03385 1.03129 1.20043 0.97418 0.92107 1.00317 1.21289 0.94374 0.97709 1.00897 1.21376 0.94743 0.97971 1.00276 1.21299 1.00394 0.92529 1.01631 1.20901 0.94749 0.97755 0.99645 1.20032 0.93993 0.94955 0.99512 1.19568 0.93824 0.85753 0.91569 0.90410 1.22832 0.86382 0.98785 0.92888 1.86562 1.33330 1.92830 1.25701 1.42690 1.05526 1.24420 1.64421 1.19680 0.92069 1.00103 1.25739 0.90195 1.25607 0.95944 1.02199 1.03267 1.69846 1.04350 1.36544 1.51421 0.85176 0.76863 0.78940 0.78546 1.20274 1.22367 1.20223 0.89897 0.89601 0.92081 0.83154 0.83391 0.85443 0.89253 0.94983 0.92035 0.77079 0.79164 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.68 9.57 71.24 0.68 -2.00 16 2 C -0.10 -3.03 5.88 -19.87 -0.12 -3.14 16 3 C -0.12 -3.29 9.70 22.27 0.22 -3.07 16 4 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 5 C -0.14 -4.69 10.05 22.27 0.22 -4.47 16 6 C -0.11 -4.61 8.90 22.27 0.20 -4.41 16 7 C -0.08 -3.26 4.67 -19.87 -0.09 -3.36 16 8 C 0.20 8.48 2.44 44.24 0.11 8.59 16 9 H 0.08 3.15 6.01 -2.39 -0.01 3.13 16 10 C 0.07 2.61 6.87 71.98 0.49 3.11 16 11 O -0.58 -21.85 12.81 -148.98 -1.91 -23.76 16 12 N -0.73 -39.03 4.94 -326.51 -1.61 -40.64 16 13 C -0.24 -13.93 9.93 84.03 0.83 -13.09 16 14 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 15 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 16 N -0.97 -61.72 13.06 21.65 0.28 -61.44 16 17 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 23 H 0.06 1.57 6.00 -2.39 -0.01 1.55 16 24 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 25 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 26 H 0.13 3.75 8.06 -2.92 -0.02 3.72 16 27 H 0.09 4.30 6.13 -2.91 -0.02 4.28 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.79 8.10 -2.38 -0.02 1.77 16 30 H 0.38 10.28 9.12 -74.06 -0.68 9.61 16 31 H 0.37 21.96 5.52 -92.71 -0.51 21.45 16 32 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -71.27 270.81 1.97 -69.30 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.05 Total: 36.68 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.24 Total: -29.18 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -1.33 Total: -102.08 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -1.91 Total: -23.76 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -71.27 1.97 -69.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308714584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.832 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds