Wall clock time and date at job start Sun Mar 29 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31795 * 119.08167 * 2 1 4 4 C 1.32549 * 121.00732 * 180.02562 * 3 2 1 5 5 C 1.38119 * 119.20254 * 359.97438 * 4 3 2 6 6 C 1.39619 * 118.32925 * 0.28015 * 5 4 3 7 7 N 1.38548 * 120.52939 * 179.72294 * 6 5 4 8 8 C 1.46500 * 119.99814 * 359.97438 * 7 6 5 9 9 C 1.52996 * 109.47037 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47167 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47254 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99642 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00120 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99797 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46901 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47038 * 119.99734 * 15 13 11 18 18 H 1.48500 * 109.46852 * 239.99575 * 15 13 11 19 19 N 1.31745 * 119.08728 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47539 * 89.99796 * 1 2 3 21 21 H 1.09006 * 109.46942 * 209.99872 * 1 2 3 22 22 H 1.09007 * 109.46950 * 329.99395 * 1 2 3 23 23 H 1.08006 * 120.39643 * 180.02562 * 4 3 2 24 24 H 1.08002 * 120.83114 * 179.97438 * 5 4 3 25 25 H 0.96995 * 120.00347 * 179.97438 * 7 6 5 26 26 H 1.08995 * 109.47476 * 300.00148 * 8 7 6 27 27 H 1.09004 * 109.47271 * 60.00374 * 8 7 6 28 28 H 1.08999 * 109.47723 * 300.00636 * 9 8 7 29 29 H 1.09001 * 109.46856 * 60.00638 * 9 8 7 30 30 H 1.09003 * 109.47084 * 300.00014 * 10 9 8 31 31 H 1.09004 * 109.47384 * 60.00437 * 10 9 8 32 32 H 0.97001 * 120.00107 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1963 -0.0005 5 6 4.1863 0.0140 -0.0005 6 6 3.4768 -1.1884 -0.0060 7 7 4.1470 -2.4010 -0.0120 8 6 5.6118 -2.4284 -0.0132 9 6 6.0947 -3.8801 -0.0195 10 6 7.6244 -3.9087 -0.0201 11 6 8.1002 -5.3386 -0.0270 12 1 7.3831 -6.1462 -0.0301 13 6 9.4508 -5.6158 -0.0282 14 7 10.3240 -4.6324 -0.0238 15 14 10.0404 -7.3884 -0.0359 16 1 8.8682 -8.2999 -0.0393 17 1 10.8609 -7.6318 -1.2495 18 1 10.8610 -7.6423 1.1754 19 7 2.1474 -1.1513 0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 3.9872 2.1458 -0.0001 24 1 5.2663 0.0196 -0.0013 25 1 3.6465 -3.2318 -0.0154 26 1 5.9840 -1.9174 -0.9011 27 1 5.9853 -1.9255 0.8789 28 1 5.7225 -4.3908 0.8686 29 1 5.7212 -4.3833 -0.9113 30 1 7.9970 -3.3980 -0.9081 31 1 7.9977 -3.4056 0.8719 32 1 11.2742 -4.8274 -0.0251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308726703.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:45 Heat of formation + Delta-G solvation = 28.263182 kcal Electronic energy + Delta-G solvation = -13935.731283 eV Core-core repulsion = 11509.614847 eV Total energy + Delta-G solvation = -2426.116436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80510 -36.90465 -34.05011 -33.27824 -32.29977 -30.50750 -28.30736 -26.68369 -23.67523 -23.53158 -21.54709 -20.53184 -17.80885 -17.10894 -16.36319 -15.41389 -15.17646 -14.67157 -14.64735 -14.36822 -14.16016 -13.12042 -12.93739 -12.44786 -12.38333 -12.15723 -11.89491 -11.12219 -10.91653 -10.86132 -10.61198 -10.55656 -9.97266 -9.61576 -9.59319 -9.20847 -9.10436 -8.44502 -8.00525 -6.09228 -4.12217 1.13502 1.49318 3.13336 3.25980 3.33909 3.37807 3.95358 4.16026 4.39071 4.45869 4.87182 5.27153 5.27176 5.43264 5.46261 5.48091 5.48881 5.55377 5.79455 5.87469 5.93775 6.29338 6.44193 6.58158 6.82581 6.90735 7.37838 7.53499 7.64611 7.69833 7.88889 8.30040 8.38524 8.94286 9.52697 11.02096 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.077260 B = 0.004180 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.324306 B = 6697.701782 C = 7028.972646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.353 3.647 3 N -0.572 5.572 4 C 0.175 3.825 5 C -0.300 4.300 6 C 0.441 3.559 7 N -0.704 5.704 8 C 0.120 3.880 9 C -0.121 4.121 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.585 5.585 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.163 0.837 24 H 0.143 0.857 25 H 0.406 0.594 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 8.895 0.027 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 N -0.292 5.292 4 C 0.014 3.986 5 C -0.328 4.328 6 C 0.196 3.804 7 N -0.334 5.334 8 C -0.004 4.004 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.311 5.311 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.180 0.820 24 H 0.161 0.839 25 H 0.242 0.758 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.501 8.921 0.033 17.025 hybrid contribution 1.398 -1.313 -0.023 1.918 sum -13.103 7.608 0.010 15.151 Atomic orbital electron populations 1.20516 0.86247 1.03757 1.03547 1.22860 0.97506 0.82843 0.88392 1.68237 1.09988 1.29728 1.21291 1.22825 0.89466 0.97858 0.88498 1.22202 1.02586 0.92972 1.15050 1.18641 0.88136 0.87259 0.86373 1.44937 1.07093 1.04639 1.76740 1.21819 0.76349 1.00787 1.01397 1.21887 1.00984 0.91706 1.01325 1.19037 0.87097 0.97548 0.97618 1.21229 0.91715 0.92247 1.50948 0.92538 1.25024 0.96963 0.97280 0.95152 1.69965 1.01629 1.31121 1.50605 0.86514 0.78807 0.84917 0.77652 1.19713 1.20943 1.20947 1.67772 1.07771 1.31340 1.24225 0.89913 0.89965 0.89828 0.82011 0.83920 0.75786 0.91745 0.91751 0.92462 0.92462 0.96238 0.96235 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.32 36.00 0.37 -0.42 16 2 C 0.35 4.89 7.64 -157.24 -1.20 3.69 16 3 N -0.57 -7.96 10.33 -10.81 -0.11 -8.07 16 4 C 0.17 2.20 11.29 -17.29 -0.20 2.00 16 5 C -0.30 -4.08 9.40 -39.11 -0.37 -4.45 16 6 C 0.44 6.70 7.71 -154.77 -1.19 5.51 16 7 N -0.70 -10.39 5.71 -60.27 -0.34 -10.74 16 8 C 0.12 1.87 4.93 -4.04 -0.02 1.85 16 9 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 N -0.59 -8.94 10.37 -9.97 -0.10 -9.04 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 23 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16 24 H 0.14 1.76 6.87 -52.49 -0.36 1.40 16 25 H 0.41 5.71 8.60 -40.82 -0.35 5.35 16 26 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 27 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 279.16 15.07 4.21 4.21 Total: -1.00 -30.64 279.16 -8.40 -39.04 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.46 Total: 0.76 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.30 Total: -6.88 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.18 Total: -53.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.64 -8.40 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308726703.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.300 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds