Wall clock time and date at job start Sun Mar 29 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31795 * 119.08167 * 2 1 4 4 C 1.32549 * 121.00732 * 180.02562 * 3 2 1 5 5 C 1.38119 * 119.20254 * 359.97438 * 4 3 2 6 6 C 1.39619 * 118.32925 * 0.28015 * 5 4 3 7 7 N 1.38548 * 120.52939 * 179.72294 * 6 5 4 8 8 C 1.46500 * 119.99814 * 359.97438 * 7 6 5 9 9 C 1.52996 * 109.47037 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47167 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47254 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99642 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00120 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99797 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46901 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47038 * 119.99734 * 15 13 11 18 18 H 1.48500 * 109.46852 * 239.99575 * 15 13 11 19 19 N 1.31745 * 119.08728 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47539 * 89.99796 * 1 2 3 21 21 H 1.09006 * 109.46942 * 209.99872 * 1 2 3 22 22 H 1.09007 * 109.46950 * 329.99395 * 1 2 3 23 23 H 1.08006 * 120.39643 * 180.02562 * 4 3 2 24 24 H 1.08002 * 120.83114 * 179.97438 * 5 4 3 25 25 H 0.96995 * 120.00347 * 179.97438 * 7 6 5 26 26 H 1.08995 * 109.47476 * 300.00148 * 8 7 6 27 27 H 1.09004 * 109.47271 * 60.00374 * 8 7 6 28 28 H 1.08999 * 109.47723 * 300.00636 * 9 8 7 29 29 H 1.09001 * 109.46856 * 60.00638 * 9 8 7 30 30 H 1.09003 * 109.47084 * 300.00014 * 10 9 8 31 31 H 1.09004 * 109.47384 * 60.00437 * 10 9 8 32 32 H 0.97001 * 120.00107 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1963 -0.0005 5 6 4.1863 0.0140 -0.0005 6 6 3.4768 -1.1884 -0.0060 7 7 4.1470 -2.4010 -0.0120 8 6 5.6118 -2.4284 -0.0132 9 6 6.0947 -3.8801 -0.0195 10 6 7.6244 -3.9087 -0.0201 11 6 8.1002 -5.3386 -0.0270 12 1 7.3831 -6.1462 -0.0301 13 6 9.4508 -5.6158 -0.0282 14 7 10.3240 -4.6324 -0.0238 15 14 10.0404 -7.3884 -0.0359 16 1 8.8682 -8.2999 -0.0393 17 1 10.8609 -7.6318 -1.2495 18 1 10.8610 -7.6423 1.1754 19 7 2.1474 -1.1513 0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 3.9872 2.1458 -0.0001 24 1 5.2663 0.0196 -0.0013 25 1 3.6465 -3.2318 -0.0154 26 1 5.9840 -1.9174 -0.9011 27 1 5.9853 -1.9255 0.8789 28 1 5.7225 -4.3908 0.8686 29 1 5.7212 -4.3833 -0.9113 30 1 7.9970 -3.3980 -0.9081 31 1 7.9977 -3.4056 0.8719 32 1 11.2742 -4.8274 -0.0251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308726703.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:45 Heat of formation + Delta-G solvation = 9.415501 kcal Electronic energy + Delta-G solvation = -13936.548580 eV Core-core repulsion = 11509.614847 eV Total energy + Delta-G solvation = -2426.933733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.84855 -38.15102 -35.76717 -34.37932 -33.83237 -31.94672 -29.21879 -28.40227 -25.21505 -24.68718 -22.79787 -22.09680 -18.97795 -18.50495 -18.06920 -16.62131 -16.53020 -16.20661 -15.89180 -15.73508 -15.19404 -14.32900 -14.14561 -14.04940 -13.71797 -13.35998 -13.15202 -12.84486 -12.59968 -12.37415 -12.22266 -11.65584 -11.61262 -11.50132 -11.20643 -10.68845 -10.56522 -10.18240 -9.13060 -8.21634 -6.31911 0.11791 0.41778 1.40085 1.41199 1.53507 1.97899 2.41004 2.91635 3.12673 3.25364 3.49098 3.81864 4.06047 4.17520 4.34185 4.49484 4.57226 4.59781 4.77655 4.85617 4.91007 4.96083 5.09293 5.13040 5.41608 5.50418 5.69895 5.78832 5.83013 6.20448 6.28353 6.58603 6.84914 7.33239 7.37575 8.90220 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.077260 B = 0.004180 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.324306 B = 6697.701782 C = 7028.972646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.339 3.661 3 N -0.582 5.582 4 C 0.176 3.824 5 C -0.310 4.310 6 C 0.423 3.577 7 N -0.704 5.704 8 C 0.136 3.864 9 C -0.105 4.105 10 C 0.027 3.973 11 C -0.543 4.543 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.603 5.603 20 H 0.096 0.904 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.197 0.803 24 H 0.153 0.847 25 H 0.409 0.591 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.060 0.940 30 H -0.001 1.001 31 H -0.001 1.001 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 8.869 0.004 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 N -0.303 5.303 4 C 0.015 3.985 5 C -0.338 4.338 6 C 0.179 3.821 7 N -0.335 5.335 8 C 0.012 3.988 9 C -0.143 4.143 10 C -0.011 4.011 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.787 3.213 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.329 5.329 20 H 0.115 0.885 21 H 0.107 0.893 22 H 0.115 0.885 23 H 0.214 0.786 24 H 0.170 0.830 25 H 0.245 0.755 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.459 8.901 0.011 17.838 hybrid contribution 1.650 -1.233 -0.017 2.060 sum -13.809 7.668 -0.006 15.795 Atomic orbital electron populations 1.20639 0.83701 1.04728 1.04685 1.23635 0.99177 0.82512 0.87610 1.68347 1.10643 1.29750 1.21552 1.23414 0.89236 0.98950 0.86900 1.22401 1.03190 0.92885 1.15321 1.18877 0.88588 0.87614 0.87015 1.44721 1.06429 1.04945 1.77397 1.21484 0.77102 0.98492 1.01695 1.21592 0.97101 0.94015 1.01636 1.18924 0.90801 0.95782 0.95610 1.21704 0.92189 0.93747 1.50513 0.92177 1.25929 0.97281 1.01702 0.94788 1.70081 1.02004 1.33393 1.51639 0.85436 0.78428 0.79679 0.77731 1.18691 1.20465 1.20478 1.67810 1.07904 1.32213 1.24985 0.88543 0.89332 0.88479 0.78644 0.82971 0.75522 0.91494 0.91515 0.92124 0.92115 0.98227 0.98228 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.32 71.24 0.73 -0.65 16 2 C 0.34 8.91 7.64 138.76 1.06 9.97 16 3 N -0.58 -15.19 10.33 -188.10 -1.94 -17.13 16 4 C 0.18 4.09 11.29 84.56 0.95 5.04 16 5 C -0.31 -8.03 9.40 22.57 0.21 -7.81 16 6 C 0.42 12.46 7.71 133.16 1.03 13.49 16 7 N -0.70 -20.20 5.71 -344.60 -1.97 -22.17 16 8 C 0.14 4.17 4.93 86.38 0.43 4.60 16 9 C -0.11 -3.92 5.27 30.59 0.16 -3.76 16 10 C 0.03 1.31 4.97 29.85 0.15 1.46 16 11 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.00 0.06 5.46 84.65 0.46 0.52 16 14 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 15 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 N -0.60 -17.82 10.37 -185.44 -1.92 -19.74 16 20 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 22 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 24 H 0.15 3.55 6.87 -2.91 -0.02 3.53 16 25 H 0.41 11.16 8.60 -92.71 -0.80 10.36 16 26 H 0.07 2.03 7.97 -2.39 -0.02 2.01 16 27 H 0.07 2.02 7.97 -2.38 -0.02 2.00 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 31 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -64.79 279.16 2.21 -62.58 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.31 Total: 12.66 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.42 Total: -6.71 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -5.55 Total: -113.82 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.79 2.21 -62.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308726703.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.997 kcal (2) G-P(sol) polarization free energy of solvation -64.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds