Wall clock time and date at job start Sun Mar 29 2020 22:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38119 * 120.39411 * 2 1 4 4 C 1.39624 * 118.32846 * 180.02562 * 3 2 1 5 5 N 1.38543 * 120.53030 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47332 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47067 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47116 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99960 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99930 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00473 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00044 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46852 * 59.99999 * 13 11 9 15 15 H 1.48501 * 109.47397 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47348 * 300.00447 * 13 11 9 17 17 N 1.32991 * 118.93973 * 359.97438 * 4 3 2 18 18 C 1.31753 * 120.68859 * 0.02562 * 17 4 3 19 19 N 1.31795 * 121.82709 * 359.70747 * 18 17 4 20 20 H 1.08999 * 109.47015 * 90.00118 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99270 * 1 2 3 22 22 H 1.09000 * 109.47248 * 329.99988 * 1 2 3 23 23 H 1.07997 * 120.83606 * 359.97438 * 3 2 1 24 24 H 0.97000 * 120.00053 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.46962 * 300.00115 * 6 5 4 26 26 H 1.09007 * 109.47327 * 59.99805 * 6 5 4 27 27 H 1.09002 * 109.47266 * 300.00020 * 7 6 5 28 28 H 1.09000 * 109.47134 * 60.00383 * 7 6 5 29 29 H 1.09002 * 109.47070 * 300.00111 * 8 7 6 30 30 H 1.09001 * 109.47339 * 60.00396 * 8 7 6 31 31 H 0.96997 * 120.00528 * 179.97438 * 12 11 9 32 32 H 1.07998 * 119.08712 * 179.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2059 1.1914 0.0000 4 6 3.6012 1.1410 -0.0005 5 7 4.3476 2.3083 -0.0011 6 6 3.6733 3.6089 -0.0006 7 6 4.7192 4.7255 -0.0007 8 6 4.0150 6.0838 0.0005 9 6 5.0452 7.1838 -0.0003 10 1 6.0969 6.9386 -0.0019 11 6 4.6449 8.5031 0.0001 12 7 3.3641 8.8018 0.0016 13 14 5.9218 9.8666 -0.0002 14 1 6.7707 9.7495 -1.2130 15 1 5.2384 11.1850 0.0009 16 1 6.7716 9.7492 1.2119 17 7 4.2024 -0.0452 -0.0005 18 6 3.4957 -1.1572 -0.0005 19 7 2.1778 -1.1432 0.0052 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3632 -0.8901 0.5137 22 1 -0.3634 0.8900 0.5138 23 1 1.6861 2.1380 -0.0004 24 1 5.3166 2.2643 -0.0011 25 1 3.0492 3.6949 -0.8901 26 1 3.0505 3.6950 0.8899 27 1 5.3430 4.6393 0.8890 28 1 5.3422 4.6397 -0.8910 29 1 3.3909 6.1704 -0.8890 30 1 3.3922 6.1695 0.8910 31 1 3.0825 9.7300 0.0022 32 1 4.0106 -2.1065 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308746827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:45 Heat of formation + Delta-G solvation = 26.032983 kcal Electronic energy + Delta-G solvation = -13981.493875 eV Core-core repulsion = 11555.280730 eV Total energy + Delta-G solvation = -2426.213145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79818 -36.86530 -34.32204 -33.54480 -31.97281 -30.32892 -28.19813 -26.70413 -24.26929 -22.80847 -21.80584 -20.48581 -17.82913 -16.94202 -16.29979 -15.34796 -15.23197 -14.79066 -14.59305 -14.55581 -14.22683 -13.16692 -12.97200 -12.44224 -12.32584 -12.24438 -11.89934 -11.05102 -10.90676 -10.75234 -10.65929 -10.54300 -9.93751 -9.61307 -9.58433 -9.23311 -9.11536 -8.43526 -8.01114 -6.08630 -4.11835 1.14205 1.48082 3.16424 3.28570 3.33367 3.35854 3.98063 4.20021 4.39318 4.44963 4.86135 5.19181 5.27555 5.30319 5.45932 5.47369 5.55341 5.61022 5.79537 5.86512 5.93561 6.29083 6.44404 6.58143 6.82259 6.90463 7.39022 7.53322 7.64886 7.70079 7.89121 8.30298 8.38385 8.94158 9.52963 11.02616 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059619 B = 0.004420 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.534821 B = 6333.787095 C = 6772.270518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.197 3.803 3 C -0.294 4.294 4 C 0.440 3.560 5 N -0.704 5.704 6 C 0.119 3.881 7 C -0.121 4.121 8 C 0.025 3.975 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.590 5.590 18 C 0.337 3.663 19 N -0.574 5.574 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.142 0.858 24 H 0.407 0.593 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 -15.206 -0.035 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.056 3.944 3 C -0.322 4.322 4 C 0.195 3.805 5 N -0.334 5.334 6 C -0.004 4.004 7 C -0.159 4.159 8 C -0.012 4.012 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.316 5.316 18 C 0.046 3.954 19 N -0.295 5.295 20 H 0.100 0.900 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.160 0.840 24 H 0.242 0.758 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.111 -15.649 -0.026 15.956 hybrid contribution 0.723 1.648 -0.015 1.800 sum -2.388 -14.001 -0.041 14.204 Atomic orbital electron populations 1.20743 0.88368 1.03698 1.03383 1.21342 0.97087 0.87802 0.88209 1.22023 0.93737 1.00941 1.15492 1.18656 0.88648 0.86789 0.86396 1.44929 1.09169 1.02577 1.76733 1.21817 0.96872 0.80314 1.01373 1.21887 0.97277 0.95415 1.01323 1.19026 0.95860 0.88741 0.97604 1.21152 0.92973 0.90940 1.51220 0.92649 1.25012 0.95286 0.98906 0.95120 1.69942 1.14271 1.18703 1.50426 0.86630 0.81495 0.81055 0.78669 1.20197 1.21215 1.20201 1.67961 1.41766 0.97913 1.23951 1.24546 0.86691 0.95616 0.88502 1.68231 1.09984 1.29938 1.21324 0.89959 0.90232 0.90298 0.84015 0.75751 0.91769 0.91778 0.92460 0.92458 0.96251 0.96245 0.92816 0.79248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.21 36.01 0.37 -0.60 16 2 C 0.20 2.56 6.82 -82.33 -0.56 1.99 16 3 C -0.29 -4.07 9.08 -39.11 -0.35 -4.43 16 4 C 0.44 6.65 7.71 -154.78 -1.19 5.45 16 5 N -0.70 -10.38 5.71 -60.27 -0.34 -10.72 16 6 C 0.12 1.87 4.93 -4.04 -0.02 1.85 16 7 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 8 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16 9 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 10 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 13 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 N -0.59 -8.79 10.47 -13.81 -0.14 -8.93 16 18 C 0.34 4.40 12.28 -92.19 -1.13 3.27 16 19 N -0.57 -7.84 10.37 -10.88 -0.11 -7.95 16 20 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 23 H 0.14 1.80 6.87 -52.49 -0.36 1.44 16 24 H 0.41 5.69 8.60 -40.82 -0.35 5.34 16 25 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 26 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -30.42 279.00 -8.73 -39.15 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.46 Total: 1.02 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -3.58 Total: -7.50 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.13 Total: -53.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.42 -8.73 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308746827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.178 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds