Wall clock time and date at job start Sun Mar 29 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38119 * 120.39411 * 2 1 4 4 C 1.39624 * 118.32846 * 180.02562 * 3 2 1 5 5 N 1.38543 * 120.53030 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47332 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47067 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47116 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99960 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99930 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00473 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00044 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46852 * 59.99999 * 13 11 9 15 15 H 1.48501 * 109.47397 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47348 * 300.00447 * 13 11 9 17 17 N 1.32991 * 118.93973 * 359.97438 * 4 3 2 18 18 C 1.31753 * 120.68859 * 0.02562 * 17 4 3 19 19 N 1.31795 * 121.82709 * 359.70747 * 18 17 4 20 20 H 1.08999 * 109.47015 * 90.00118 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99270 * 1 2 3 22 22 H 1.09000 * 109.47248 * 329.99988 * 1 2 3 23 23 H 1.07997 * 120.83606 * 359.97438 * 3 2 1 24 24 H 0.97000 * 120.00053 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.46962 * 300.00115 * 6 5 4 26 26 H 1.09007 * 109.47327 * 59.99805 * 6 5 4 27 27 H 1.09002 * 109.47266 * 300.00020 * 7 6 5 28 28 H 1.09000 * 109.47134 * 60.00383 * 7 6 5 29 29 H 1.09002 * 109.47070 * 300.00111 * 8 7 6 30 30 H 1.09001 * 109.47339 * 60.00396 * 8 7 6 31 31 H 0.96997 * 120.00528 * 179.97438 * 12 11 9 32 32 H 1.07998 * 119.08712 * 179.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2059 1.1914 0.0000 4 6 3.6012 1.1410 -0.0005 5 7 4.3476 2.3083 -0.0011 6 6 3.6733 3.6089 -0.0006 7 6 4.7192 4.7255 -0.0007 8 6 4.0150 6.0838 0.0005 9 6 5.0452 7.1838 -0.0003 10 1 6.0969 6.9386 -0.0019 11 6 4.6449 8.5031 0.0001 12 7 3.3641 8.8018 0.0016 13 14 5.9218 9.8666 -0.0002 14 1 6.7707 9.7495 -1.2130 15 1 5.2384 11.1850 0.0009 16 1 6.7716 9.7492 1.2119 17 7 4.2024 -0.0452 -0.0005 18 6 3.4957 -1.1572 -0.0005 19 7 2.1778 -1.1432 0.0052 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3632 -0.8901 0.5137 22 1 -0.3634 0.8900 0.5138 23 1 1.6861 2.1380 -0.0004 24 1 5.3166 2.2643 -0.0011 25 1 3.0492 3.6949 -0.8901 26 1 3.0505 3.6950 0.8899 27 1 5.3430 4.6393 0.8890 28 1 5.3422 4.6397 -0.8910 29 1 3.3909 6.1704 -0.8890 30 1 3.3922 6.1695 0.8910 31 1 3.0825 9.7300 0.0022 32 1 4.0106 -2.1065 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308746827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:44 Heat of formation + Delta-G solvation = 8.081405 kcal Electronic energy + Delta-G solvation = -13982.272314 eV Core-core repulsion = 11555.280730 eV Total energy + Delta-G solvation = -2426.991584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.83792 -38.11473 -35.81386 -34.90610 -33.55397 -31.66754 -29.15236 -28.33877 -25.66315 -24.22714 -22.90052 -22.10928 -18.97514 -18.51479 -17.84393 -16.58803 -16.52014 -16.26632 -15.86168 -15.77262 -15.48462 -14.29546 -14.19000 -13.87005 -13.74305 -13.61427 -13.10017 -12.80317 -12.58504 -12.42775 -12.10695 -11.64310 -11.53609 -11.48838 -11.23125 -10.65659 -10.54820 -10.18198 -9.14199 -8.20707 -6.31207 0.13081 0.40288 1.41499 1.43307 1.51267 2.00487 2.41667 2.94485 3.13449 3.31295 3.48026 3.80437 4.06042 4.17551 4.27001 4.43903 4.51549 4.67559 4.78109 4.86652 4.91130 4.96613 5.11459 5.13479 5.41992 5.50535 5.70329 5.76950 5.83337 6.21267 6.29791 6.59239 6.85128 7.33904 7.38197 8.90736 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059619 B = 0.004420 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.534821 B = 6333.787095 C = 6772.270518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.193 3.807 3 C -0.307 4.307 4 C 0.424 3.576 5 N -0.704 5.704 6 C 0.136 3.864 7 C -0.105 4.105 8 C 0.027 3.973 9 C -0.546 4.546 10 H 0.060 0.940 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.962 3.038 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.268 1.268 17 N -0.607 5.607 18 C 0.332 3.668 19 N -0.583 5.583 20 H 0.095 0.905 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.149 0.851 24 H 0.409 0.591 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.060 0.940 29 H -0.001 1.001 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -15.896 -0.053 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.051 3.949 3 C -0.335 4.335 4 C 0.180 3.820 5 N -0.335 5.335 6 C 0.012 3.988 7 C -0.143 4.143 8 C -0.011 4.011 9 C -0.584 4.584 10 H 0.078 0.922 11 C -0.196 4.196 12 N -0.571 5.571 13 Si 0.786 3.214 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.193 1.193 17 N -0.333 5.333 18 C 0.042 3.958 19 N -0.304 5.304 20 H 0.114 0.886 21 H 0.105 0.895 22 H 0.110 0.890 23 H 0.167 0.833 24 H 0.246 0.754 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.741 -16.367 -0.044 16.595 hybrid contribution 0.570 1.784 -0.011 1.872 sum -2.172 -14.584 -0.055 14.745 Atomic orbital electron populations 1.20846 0.85848 1.04735 1.04507 1.21930 0.98807 0.87310 0.86835 1.22200 0.93428 1.01777 1.16059 1.18857 0.89259 0.86899 0.86977 1.44712 1.09235 1.02161 1.77376 1.21479 0.95727 0.79970 1.01628 1.21592 0.97511 0.93578 1.01650 1.18916 0.95219 0.91342 0.95595 1.21646 0.93836 0.92109 1.50778 0.92172 1.25913 0.97298 1.01608 0.94736 1.70066 1.16250 1.19277 1.51489 0.85553 0.78921 0.77790 0.79109 1.19293 1.20916 1.19308 1.67992 1.42348 0.98238 1.24679 1.25244 0.86851 0.96315 0.87344 1.68340 1.10294 1.30228 1.21588 0.88615 0.89483 0.88980 0.83309 0.75439 0.91572 0.91588 0.92101 0.92095 0.98247 0.98241 0.92734 0.76100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 10.21 71.24 0.73 -0.95 16 2 C 0.19 4.69 6.82 42.42 0.29 4.98 16 3 C -0.31 -8.16 9.08 22.58 0.20 -7.95 16 4 C 0.42 12.41 7.71 133.16 1.03 13.44 16 5 N -0.70 -20.16 5.71 -344.59 -1.97 -22.13 16 6 C 0.14 4.18 4.93 86.38 0.43 4.60 16 7 C -0.11 -3.91 5.27 30.59 0.16 -3.75 16 8 C 0.03 1.33 4.97 29.85 0.15 1.48 16 9 C -0.55 -29.87 9.11 25.60 0.23 -29.64 16 10 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 11 C 0.00 0.15 5.46 84.65 0.46 0.61 16 12 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 13 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 N -0.61 -17.35 10.47 -197.61 -2.07 -19.42 16 18 C 0.33 8.14 12.28 180.90 2.22 10.36 16 19 N -0.58 -14.96 10.37 -188.33 -1.95 -16.92 16 20 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 23 H 0.15 3.63 6.87 -2.91 -0.02 3.61 16 24 H 0.41 11.10 8.60 -92.71 -0.80 10.31 16 25 H 0.07 2.02 7.97 -2.39 -0.02 2.00 16 26 H 0.07 2.01 7.98 -2.38 -0.02 1.99 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.22 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -64.19 279.00 2.53 -61.66 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.31 Total: 13.17 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 5.90 Total: -6.82 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.71 Total: -113.18 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -64.19 2.53 -61.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308746827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.739 kcal (2) G-P(sol) polarization free energy of solvation -64.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds