Wall clock time and date at job start Sun Mar 29 2020 22:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31950 * 120.05173 * 2 1 4 4 C 1.32239 * 120.08796 * 180.02562 * 3 2 1 5 5 C 1.38209 * 120.18725 * 359.95662 * 4 3 2 6 6 N 1.32212 * 120.10704 * 0.04482 * 5 4 3 7 7 C 1.32684 * 119.91088 * 359.97438 * 6 5 4 8 8 N 1.39000 * 120.09137 * 179.72631 * 7 6 5 9 9 C 1.46501 * 120.00288 * 359.97438 * 8 7 6 10 10 C 1.53004 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46964 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47049 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99904 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99838 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00053 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47017 * 90.00256 * 16 14 12 18 18 H 1.48502 * 109.47054 * 210.00274 * 16 14 12 19 19 H 1.48500 * 109.46777 * 330.00122 * 16 14 12 20 20 H 1.09002 * 109.46798 * 269.97440 * 1 2 3 21 21 H 1.08992 * 109.47486 * 29.97660 * 1 2 3 22 22 H 1.09008 * 109.46836 * 149.97589 * 1 2 3 23 23 H 1.08005 * 119.90855 * 179.97438 * 4 3 2 24 24 H 1.08002 * 119.94770 * 180.02562 * 5 4 3 25 25 H 0.97008 * 119.99920 * 180.02562 * 8 7 6 26 26 H 1.08994 * 109.47173 * 300.00100 * 9 8 7 27 27 H 1.08999 * 109.46800 * 60.00342 * 9 8 7 28 28 H 1.08994 * 109.46996 * 299.99948 * 10 9 8 29 29 H 1.09000 * 109.46813 * 60.00045 * 10 9 8 30 30 H 1.09000 * 109.46878 * 300.00443 * 11 10 9 31 31 H 1.08999 * 109.46899 * 60.00078 * 11 10 9 32 32 H 0.96999 * 120.00141 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1421 0.0000 4 6 3.4902 1.1430 -0.0005 5 6 4.1859 -0.0513 -0.0001 6 7 3.5314 -1.2000 -0.0002 7 6 2.2046 -1.2056 0.0000 8 7 1.5127 -2.4112 -0.0058 9 6 2.2485 -3.6780 -0.0126 10 6 1.2572 -4.8435 -0.0187 11 6 2.0256 -6.1666 -0.0252 12 6 1.0493 -7.3145 -0.0318 13 1 -0.0130 -7.1198 -0.0310 14 6 1.5123 -8.6132 -0.0378 15 7 0.6602 -9.6149 -0.0430 16 14 3.3497 -8.9498 -0.0384 17 1 3.8358 -9.0457 1.3615 18 1 3.6185 -10.2282 -0.7445 19 1 4.0554 -7.8429 -0.7328 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 4.0281 2.0795 -0.0009 24 1 5.2659 -0.0461 -0.0001 25 1 0.5427 -2.4137 -0.0061 26 1 2.8748 -3.7297 -0.9031 27 1 2.8757 -3.7387 0.8768 28 1 0.6306 -4.7921 0.8716 29 1 0.6303 -4.7826 -0.9083 30 1 2.6527 -6.2181 -0.9152 31 1 2.6522 -6.2271 0.8647 32 1 0.9859 -10.5286 -0.0476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308753188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:14 Heat of formation + Delta-G solvation = 34.346677 kcal Electronic energy + Delta-G solvation = -14152.879339 eV Core-core repulsion = 11727.026703 eV Total energy + Delta-G solvation = -2425.852636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02020 -36.74806 -34.37030 -33.96105 -32.18362 -30.52501 -28.02406 -26.98142 -23.87772 -22.80949 -22.08241 -20.39882 -17.96320 -17.27383 -16.69108 -15.92103 -15.50595 -14.68004 -14.55691 -14.34655 -13.87824 -13.01406 -12.82962 -12.71731 -12.44537 -12.36773 -11.91949 -11.43120 -11.25902 -11.05704 -10.85512 -10.18872 -10.01513 -9.80617 -9.73140 -9.25431 -8.99718 -8.57727 -7.72514 -6.08311 -4.07193 0.96406 1.34926 3.17848 3.29226 3.36879 3.40669 3.80392 4.20802 4.38444 4.42287 4.51042 5.08794 5.15496 5.25721 5.27492 5.42584 5.51730 5.59391 5.64177 5.85251 5.99857 6.19419 6.42430 6.50143 6.73123 7.06851 7.13631 7.20438 7.33475 7.68291 7.74053 8.05737 8.48223 8.95454 9.53817 11.04985 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051720 B = 0.005049 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.250808 B = 5544.041455 C = 6054.235089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.013 3.987 3 N -0.407 5.407 4 C -0.033 4.033 5 C 0.099 3.901 6 N -0.501 5.501 7 C 0.364 3.636 8 N -0.707 5.707 9 C 0.124 3.876 10 C -0.115 4.115 11 C -0.009 4.009 12 C -0.523 4.523 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.161 0.839 24 H 0.165 0.835 25 H 0.410 0.590 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 19.229 0.072 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 N -0.122 5.122 4 C -0.193 4.193 5 C -0.062 4.062 6 N -0.225 5.225 7 C 0.123 3.877 8 N -0.339 5.339 9 C 0.000 4.000 10 C -0.153 4.153 11 C -0.047 4.047 12 C -0.561 4.561 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 H 0.095 0.905 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.178 0.822 24 H 0.182 0.818 25 H 0.248 0.752 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.010 18.827 0.067 19.249 hybrid contribution 0.749 -0.359 0.027 0.831 sum 4.759 18.467 0.095 19.071 Atomic orbital electron populations 1.20538 0.88274 1.03357 1.03015 1.21559 0.97781 0.87911 1.06538 1.67993 1.09216 1.28200 1.06764 1.23201 0.90509 0.99402 1.06228 1.23435 1.01215 0.87927 0.93574 1.68061 1.06589 1.30043 1.17762 1.19255 0.89504 0.87508 0.91408 1.44978 1.08612 1.02625 1.77695 1.21640 0.95286 0.81280 1.01748 1.21720 0.97787 0.94086 1.01710 1.19485 0.96351 0.92277 0.96628 1.21096 0.94397 0.89437 1.51149 0.91021 1.25025 0.97758 0.96209 0.94444 1.69910 1.34297 0.99007 1.50955 0.86774 0.86119 0.77821 0.78578 1.20233 1.21342 1.18920 0.90488 0.90231 0.91035 0.82157 0.81822 0.75168 0.91964 0.91938 0.92147 0.92132 0.96325 0.96756 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.76 36.00 0.35 -0.56 16 2 C 0.01 0.17 6.81 -82.15 -0.56 -0.39 16 3 N -0.41 -5.35 10.41 -9.12 -0.09 -5.45 16 4 C -0.03 -0.37 11.21 -17.39 -0.19 -0.56 16 5 C 0.10 1.15 11.22 -17.40 -0.20 0.96 16 6 N -0.50 -7.43 9.73 -12.24 -0.12 -7.55 16 7 C 0.36 5.24 7.46 -154.72 -1.15 4.08 16 8 N -0.71 -9.86 5.61 -60.31 -0.34 -10.20 16 9 C 0.12 2.01 5.71 -4.04 -0.02 1.99 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 12 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 13 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 16 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 20 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.61 6.55 -51.92 -0.34 0.27 16 23 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 24 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 25 H 0.41 4.83 6.47 -40.82 -0.26 4.57 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 273.61 15.07 4.12 4.12 Total: -1.00 -32.28 273.61 -7.12 -39.40 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.34 Total: -0.08 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.46 Total: -10.27 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.22 Total: -50.09 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.28 -7.12 -39.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308753188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.747 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds