Wall clock time and date at job start Sun Mar 29 2020 22:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31950 * 120.05173 * 2 1 4 4 C 1.32239 * 120.08796 * 180.02562 * 3 2 1 5 5 C 1.38209 * 120.18725 * 359.95662 * 4 3 2 6 6 N 1.32212 * 120.10704 * 0.04482 * 5 4 3 7 7 C 1.32684 * 119.91088 * 359.97438 * 6 5 4 8 8 N 1.39000 * 120.09137 * 179.72631 * 7 6 5 9 9 C 1.46501 * 120.00288 * 359.97438 * 8 7 6 10 10 C 1.53004 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46964 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47049 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99904 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99838 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00053 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47017 * 90.00256 * 16 14 12 18 18 H 1.48502 * 109.47054 * 210.00274 * 16 14 12 19 19 H 1.48500 * 109.46777 * 330.00122 * 16 14 12 20 20 H 1.09002 * 109.46798 * 269.97440 * 1 2 3 21 21 H 1.08992 * 109.47486 * 29.97660 * 1 2 3 22 22 H 1.09008 * 109.46836 * 149.97589 * 1 2 3 23 23 H 1.08005 * 119.90855 * 179.97438 * 4 3 2 24 24 H 1.08002 * 119.94770 * 180.02562 * 5 4 3 25 25 H 0.97008 * 119.99920 * 180.02562 * 8 7 6 26 26 H 1.08994 * 109.47173 * 300.00100 * 9 8 7 27 27 H 1.08999 * 109.46800 * 60.00342 * 9 8 7 28 28 H 1.08994 * 109.46996 * 299.99948 * 10 9 8 29 29 H 1.09000 * 109.46813 * 60.00045 * 10 9 8 30 30 H 1.09000 * 109.46878 * 300.00443 * 11 10 9 31 31 H 1.08999 * 109.46899 * 60.00078 * 11 10 9 32 32 H 0.96999 * 120.00141 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1421 0.0000 4 6 3.4902 1.1430 -0.0005 5 6 4.1859 -0.0513 -0.0001 6 7 3.5314 -1.2000 -0.0002 7 6 2.2046 -1.2056 0.0000 8 7 1.5127 -2.4112 -0.0058 9 6 2.2485 -3.6780 -0.0126 10 6 1.2572 -4.8435 -0.0187 11 6 2.0256 -6.1666 -0.0252 12 6 1.0493 -7.3145 -0.0318 13 1 -0.0130 -7.1198 -0.0310 14 6 1.5123 -8.6132 -0.0378 15 7 0.6602 -9.6149 -0.0430 16 14 3.3497 -8.9498 -0.0384 17 1 3.8358 -9.0457 1.3615 18 1 3.6185 -10.2282 -0.7445 19 1 4.0554 -7.8429 -0.7328 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 4.0281 2.0795 -0.0009 24 1 5.2659 -0.0461 -0.0001 25 1 0.5427 -2.4137 -0.0061 26 1 2.8748 -3.7297 -0.9031 27 1 2.8757 -3.7387 0.8768 28 1 0.6306 -4.7921 0.8716 29 1 0.6303 -4.7826 -0.9083 30 1 2.6527 -6.2181 -0.9152 31 1 2.6522 -6.2271 0.8647 32 1 0.9859 -10.5286 -0.0476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308753188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:13 Heat of formation + Delta-G solvation = 12.439123 kcal Electronic energy + Delta-G solvation = -14153.829322 eV Core-core repulsion = 11727.026703 eV Total energy + Delta-G solvation = -2426.802619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.96479 -37.94929 -35.68457 -35.27375 -33.93316 -31.83939 -29.03605 -28.45105 -25.29419 -23.71620 -23.42170 -22.06356 -19.18060 -18.68441 -18.26456 -16.76006 -16.65227 -16.38360 -15.83073 -15.55715 -15.10359 -14.72624 -14.08013 -13.82148 -13.65837 -13.62425 -13.13589 -12.84179 -12.68771 -12.37615 -12.20559 -11.85194 -11.72340 -11.59248 -11.33201 -10.96833 -10.76634 -9.95813 -8.72606 -8.29766 -6.34084 0.05463 0.38140 1.37014 1.38599 1.50544 2.13618 2.36345 2.87793 3.06046 3.39400 3.45929 3.59179 4.11811 4.21478 4.24443 4.35750 4.51445 4.53667 4.72048 4.78112 4.90567 4.92211 5.03064 5.12126 5.38810 5.48384 5.55178 5.64094 6.01839 6.15347 6.27274 6.73792 6.75015 7.10306 7.30925 8.86840 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051720 B = 0.005049 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.250808 B = 5544.041455 C = 6054.235089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.006 3.994 3 N -0.427 5.427 4 C -0.026 4.026 5 C 0.093 3.907 6 N -0.531 5.531 7 C 0.343 3.657 8 N -0.707 5.707 9 C 0.143 3.857 10 C -0.103 4.103 11 C -0.009 4.009 12 C -0.533 4.533 13 H 0.035 0.965 14 C 0.004 3.996 15 N -0.951 5.951 16 Si 0.949 3.051 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.246 1.246 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.196 0.804 24 H 0.198 0.802 25 H 0.418 0.582 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.020 0.980 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 21.022 0.102 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.144 4.144 3 N -0.142 5.142 4 C -0.186 4.186 5 C -0.067 4.067 6 N -0.255 5.255 7 C 0.103 3.897 8 N -0.342 5.342 9 C 0.019 3.981 10 C -0.141 4.141 11 C -0.047 4.047 12 C -0.571 4.571 13 H 0.053 0.947 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.772 3.228 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.170 1.170 20 H 0.105 0.895 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.213 0.787 24 H 0.214 0.786 25 H 0.258 0.742 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.765 20.660 0.097 21.450 hybrid contribution 0.171 -0.808 0.020 0.826 sum 5.936 19.852 0.117 20.721 Atomic orbital electron populations 1.20618 0.86463 1.04140 1.03867 1.21925 0.99113 0.87410 1.05923 1.68089 1.10307 1.28233 1.07583 1.23829 0.90107 1.00782 1.03895 1.24019 1.02766 0.87228 0.92715 1.68039 1.07109 1.31881 1.18421 1.19412 0.89772 0.87791 0.92686 1.44723 1.08894 1.01856 1.78731 1.21202 0.94307 0.81468 1.01113 1.21496 0.97791 0.92980 1.01837 1.19435 0.95719 0.92733 0.96834 1.21475 0.93843 0.91368 1.50382 0.94652 1.26002 1.03129 0.95978 0.94123 1.70062 1.36857 0.99619 1.52663 0.85673 0.79728 0.78145 0.79215 1.19171 1.21034 1.16983 0.89519 0.89595 0.90081 0.78727 0.78574 0.74188 0.92656 0.92555 0.92058 0.92076 0.96019 0.96120 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.76 71.24 0.70 -0.96 16 2 C 0.01 0.13 6.81 42.79 0.29 0.43 16 3 N -0.43 -10.36 10.41 -182.77 -1.90 -12.26 16 4 C -0.03 -0.50 11.21 84.62 0.95 0.44 16 5 C 0.09 1.92 11.22 84.63 0.95 2.87 16 6 N -0.53 -14.87 9.73 -192.64 -1.88 -16.75 16 7 C 0.34 9.42 7.46 133.02 0.99 10.41 16 8 N -0.71 -18.96 5.61 -344.72 -1.93 -20.89 16 9 C 0.14 4.49 5.71 86.38 0.49 4.99 16 10 C -0.10 -3.75 5.27 30.60 0.16 -3.59 16 11 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 12 C -0.53 -30.34 9.66 25.60 0.25 -30.09 16 13 H 0.04 2.20 7.99 -2.91 -0.02 2.17 16 14 C 0.00 0.26 5.47 84.65 0.46 0.72 16 15 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 16 Si 0.95 44.07 27.47 68.60 1.88 45.96 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 20 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 22 H 0.08 1.26 6.55 -2.38 -0.02 1.24 16 23 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 24 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 25 H 0.42 9.41 6.47 -92.70 -0.60 8.81 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 31 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -69.73 273.61 2.29 -67.44 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.46 Total: 10.82 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.36 Total: -15.08 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -5.41 Total: -109.13 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -69.73 2.29 -67.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308753188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.876 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds