Wall clock time and date at job start Sun Mar 29 2020 22:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38208 * 119.94455 * 2 1 4 4 N 1.32247 * 120.18830 * 180.02562 * 3 2 1 5 5 C 1.31954 * 120.08270 * 359.65920 * 4 3 2 6 6 C 1.39292 * 119.89594 * 0.62117 * 5 4 3 7 7 N 1.39005 * 120.09658 * 179.68385 * 6 5 4 8 8 C 1.46499 * 119.99858 * 359.71843 * 7 6 5 9 9 C 1.52992 * 109.47267 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47277 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46913 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00408 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99553 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47207 * 90.00219 * 15 13 11 17 17 H 1.48501 * 109.47218 * 209.99776 * 15 13 11 18 18 H 1.48495 * 109.47413 * 330.00022 * 15 13 11 19 19 N 1.32221 * 119.94935 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47192 * 270.02216 * 1 2 3 21 21 H 1.09006 * 109.47540 * 30.02250 * 1 2 3 22 22 H 1.09002 * 109.47304 * 150.02358 * 1 2 3 23 23 H 1.08001 * 119.90702 * 359.97438 * 3 2 1 24 24 H 1.08001 * 120.05237 * 180.30017 * 5 4 3 25 25 H 0.96999 * 120.00158 * 179.72319 * 7 6 5 26 26 H 1.09004 * 109.47024 * 300.00634 * 8 7 6 27 27 H 1.09005 * 109.47136 * 60.00250 * 8 7 6 28 28 H 1.09004 * 109.47330 * 300.00096 * 9 8 7 29 29 H 1.09005 * 109.47124 * 59.99892 * 9 8 7 30 30 H 1.08997 * 109.46785 * 299.99511 * 10 9 8 31 31 H 1.08992 * 109.47085 * 59.99748 * 10 9 8 32 32 H 0.97005 * 120.00528 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1976 0.0000 4 7 3.5193 1.2032 -0.0005 5 6 4.1856 0.0643 0.0058 6 6 3.4938 -1.1448 -0.0002 7 7 4.1916 -2.3470 -0.0002 8 6 5.6565 -2.3437 -0.0003 9 6 6.1698 -3.7850 -0.0010 10 6 7.6999 -3.7815 -0.0004 11 6 8.2053 -5.2012 -0.0017 12 1 7.5055 -6.0236 -0.0024 13 6 9.5615 -5.4500 -0.0020 14 7 10.4138 -4.4485 -0.0006 15 14 10.1881 -7.2098 -0.0029 16 1 10.3541 -7.6754 -1.4033 17 1 11.4965 -7.2697 0.6969 18 1 9.2121 -8.0832 0.6968 19 7 2.1670 -1.1456 0.0005 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6544 2.1315 -0.0004 24 1 5.2655 0.0694 0.0102 25 1 3.7085 -3.1882 -0.0003 26 1 6.0187 -1.8289 -0.8902 27 1 6.0188 -1.8291 0.8898 28 1 5.8077 -4.3001 0.8888 29 1 5.8076 -4.2992 -0.8912 30 1 8.0623 -3.2664 -0.8900 31 1 8.0617 -3.2674 0.8899 32 1 11.3680 -4.6236 -0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308758708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:18 Heat of formation + Delta-G solvation = 28.198349 kcal Electronic energy + Delta-G solvation = -13937.584619 eV Core-core repulsion = 11511.465372 eV Total energy + Delta-G solvation = -2426.119248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92740 -36.76996 -34.37344 -33.85774 -32.17152 -30.42633 -27.73161 -26.61725 -23.81480 -23.56158 -21.67912 -20.49169 -17.81985 -16.90320 -16.48121 -16.19928 -15.41525 -14.61116 -14.56959 -14.38310 -13.82700 -13.09971 -12.80618 -12.55540 -12.26572 -12.21302 -11.88376 -11.39034 -11.22979 -10.92166 -10.81132 -10.62118 -10.04382 -9.68232 -9.56543 -9.20343 -8.99462 -8.42308 -7.72976 -6.07173 -4.10273 1.02780 1.40375 3.12319 3.28176 3.34843 3.37924 3.85785 4.34129 4.40555 4.50837 4.62517 4.97702 5.23499 5.29054 5.37625 5.43490 5.46235 5.57365 5.59927 5.84276 5.95633 6.29698 6.46405 6.54868 6.86033 6.93993 7.54580 7.55694 7.64048 7.67198 7.90812 8.08145 8.32164 8.96047 9.54461 11.04081 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.077347 B = 0.004192 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.919507 B = 6677.404698 C = 7008.272075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.131 3.869 3 C -0.037 4.037 4 N -0.401 5.401 5 C -0.020 4.020 6 C 0.367 3.633 7 N -0.707 5.707 8 C 0.118 3.882 9 C -0.120 4.120 10 C 0.025 3.975 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.514 5.514 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.160 0.840 24 H 0.166 0.834 25 H 0.405 0.595 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.115 8.393 0.024 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.011 4.011 3 C -0.198 4.198 4 N -0.113 5.113 5 C -0.189 4.189 6 C 0.126 3.874 7 N -0.337 5.337 8 C -0.005 4.005 9 C -0.158 4.158 10 C -0.013 4.013 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.239 5.239 20 H 0.099 0.901 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.177 0.823 24 H 0.183 0.817 25 H 0.241 0.759 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.681 8.452 0.025 17.814 hybrid contribution 0.340 -1.329 -0.002 1.372 sum -15.342 7.123 0.023 16.915 Atomic orbital electron populations 1.20684 0.88233 1.03641 1.03257 1.21952 0.97634 0.88736 0.92795 1.23053 0.90753 0.98591 1.07388 1.68177 1.08758 1.28916 1.05468 1.23119 1.01454 0.87059 1.07267 1.19483 0.88883 0.88519 0.90531 1.44937 1.06725 1.04520 1.77567 1.21836 0.76276 1.00950 1.01420 1.21878 1.00788 0.91863 1.01300 1.19034 0.87073 0.97538 0.97664 1.21188 0.91652 0.92289 1.51085 0.92611 1.25018 0.97058 0.97148 0.95167 1.69953 1.02194 1.30649 1.50491 0.86574 0.78277 0.84888 0.78145 1.20620 1.21167 1.19862 1.67793 1.06688 1.30059 1.19383 0.90128 0.90285 0.90394 0.82297 0.81709 0.75889 0.91699 0.91693 0.92478 0.92476 0.96207 0.96193 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.19 36.00 0.37 -0.43 16 2 C 0.13 1.60 6.78 -82.44 -0.56 1.04 16 3 C -0.04 -0.46 10.86 -17.38 -0.19 -0.65 16 4 N -0.40 -5.88 10.49 -12.88 -0.14 -6.01 16 5 C -0.02 -0.29 10.49 -17.11 -0.18 -0.47 16 6 C 0.37 5.54 7.67 -154.72 -1.19 4.35 16 7 N -0.71 -10.35 5.73 -60.31 -0.35 -10.70 16 8 C 0.12 1.85 4.90 -4.05 -0.02 1.83 16 9 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 15 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 N -0.51 -7.56 10.45 -8.48 -0.09 -7.64 16 20 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 24 H 0.17 2.25 6.73 -52.49 -0.35 1.90 16 25 H 0.41 5.63 8.60 -40.82 -0.35 5.28 16 26 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 27 H 0.06 1.00 7.93 -51.93 -0.41 0.59 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 278.78 15.07 4.20 4.20 Total: -1.00 -30.66 278.78 -7.56 -38.22 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.45 Total: 0.66 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.46 Total: -9.41 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.17 Total: -49.89 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.66 -7.56 -38.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308758708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.415 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds