Wall clock time and date at job start Sun Mar 29 2020 22:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38208 * 119.94455 * 2 1 4 4 N 1.32247 * 120.18830 * 180.02562 * 3 2 1 5 5 C 1.31954 * 120.08270 * 359.65920 * 4 3 2 6 6 C 1.39292 * 119.89594 * 0.62117 * 5 4 3 7 7 N 1.39005 * 120.09658 * 179.68385 * 6 5 4 8 8 C 1.46499 * 119.99858 * 359.71843 * 7 6 5 9 9 C 1.52992 * 109.47267 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47277 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46913 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00408 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99553 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47207 * 90.00219 * 15 13 11 17 17 H 1.48501 * 109.47218 * 209.99776 * 15 13 11 18 18 H 1.48495 * 109.47413 * 330.00022 * 15 13 11 19 19 N 1.32221 * 119.94935 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47192 * 270.02216 * 1 2 3 21 21 H 1.09006 * 109.47540 * 30.02250 * 1 2 3 22 22 H 1.09002 * 109.47304 * 150.02358 * 1 2 3 23 23 H 1.08001 * 119.90702 * 359.97438 * 3 2 1 24 24 H 1.08001 * 120.05237 * 180.30017 * 5 4 3 25 25 H 0.96999 * 120.00158 * 179.72319 * 7 6 5 26 26 H 1.09004 * 109.47024 * 300.00634 * 8 7 6 27 27 H 1.09005 * 109.47136 * 60.00250 * 8 7 6 28 28 H 1.09004 * 109.47330 * 300.00096 * 9 8 7 29 29 H 1.09005 * 109.47124 * 59.99892 * 9 8 7 30 30 H 1.08997 * 109.46785 * 299.99511 * 10 9 8 31 31 H 1.08992 * 109.47085 * 59.99748 * 10 9 8 32 32 H 0.97005 * 120.00528 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1976 0.0000 4 7 3.5193 1.2032 -0.0005 5 6 4.1856 0.0643 0.0058 6 6 3.4938 -1.1448 -0.0002 7 7 4.1916 -2.3470 -0.0002 8 6 5.6565 -2.3437 -0.0003 9 6 6.1698 -3.7850 -0.0010 10 6 7.6999 -3.7815 -0.0004 11 6 8.2053 -5.2012 -0.0017 12 1 7.5055 -6.0236 -0.0024 13 6 9.5615 -5.4500 -0.0020 14 7 10.4138 -4.4485 -0.0006 15 14 10.1881 -7.2098 -0.0029 16 1 10.3541 -7.6754 -1.4033 17 1 11.4965 -7.2697 0.6969 18 1 9.2121 -8.0832 0.6968 19 7 2.1670 -1.1456 0.0005 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6544 2.1315 -0.0004 24 1 5.2655 0.0694 0.0102 25 1 3.7085 -3.1882 -0.0003 26 1 6.0187 -1.8289 -0.8902 27 1 6.0188 -1.8291 0.8898 28 1 5.8077 -4.3001 0.8888 29 1 5.8076 -4.2992 -0.8912 30 1 8.0623 -3.2664 -0.8900 31 1 8.0617 -3.2674 0.8899 32 1 11.3680 -4.6236 -0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308758708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:18 Heat of formation + Delta-G solvation = 8.080738 kcal Electronic energy + Delta-G solvation = -13938.456985 eV Core-core repulsion = 11511.465372 eV Total energy + Delta-G solvation = -2426.991613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.96522 -38.02883 -35.71460 -35.30379 -33.75278 -31.77462 -28.69832 -28.26748 -25.21454 -24.84003 -22.90357 -22.07875 -18.97143 -18.45566 -17.94681 -17.35500 -16.62239 -16.49984 -15.81390 -15.72944 -14.74659 -14.33162 -14.07529 -13.71637 -13.66879 -13.52536 -13.13519 -12.83522 -12.53389 -12.46423 -12.38665 -12.35643 -11.67846 -11.49562 -11.21447 -10.80612 -10.55334 -10.03913 -8.82595 -8.20658 -6.31210 0.01359 0.34119 1.41282 1.41773 1.52794 1.98626 2.41573 2.82769 3.13467 3.42641 3.52148 3.58907 4.06319 4.17117 4.18892 4.30767 4.47158 4.57133 4.81686 4.90260 4.92381 4.93180 5.13964 5.16218 5.44550 5.51004 5.71088 5.76931 5.83870 6.22959 6.44619 6.58294 6.85656 7.02471 7.38178 8.91041 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.077347 B = 0.004192 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.919507 B = 6677.404698 C = 7008.272075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.128 3.872 3 C -0.033 4.033 4 N -0.421 5.421 5 C -0.041 4.041 6 C 0.353 3.647 7 N -0.707 5.707 8 C 0.134 3.866 9 C -0.104 4.104 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.061 0.939 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.264 1.264 19 N -0.531 5.531 20 H 0.096 0.904 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.196 0.804 24 H 0.166 0.834 25 H 0.408 0.592 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.061 0.939 30 H -0.001 1.001 31 H -0.001 1.001 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.998 8.333 0.026 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.014 4.014 3 C -0.195 4.195 4 N -0.134 5.134 5 C -0.208 4.208 6 C 0.113 3.887 7 N -0.338 5.338 8 C 0.011 3.989 9 C -0.142 4.142 10 C -0.012 4.012 11 C -0.582 4.582 12 H 0.079 0.921 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.188 1.188 19 N -0.256 5.256 20 H 0.114 0.886 21 H 0.127 0.873 22 H 0.094 0.906 23 H 0.213 0.787 24 H 0.183 0.817 25 H 0.245 0.755 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.570 8.385 0.026 19.469 hybrid contribution 0.802 -1.204 -0.002 1.447 sum -16.768 7.181 0.024 18.241 Atomic orbital electron populations 1.20831 0.84970 1.05032 1.04585 1.22708 0.99674 0.88021 0.91045 1.23717 0.90112 1.00216 1.05452 1.68189 1.10147 1.28910 1.06108 1.23152 1.01735 0.87311 1.08601 1.19527 0.89349 0.88410 0.91379 1.44672 1.05979 1.04803 1.78350 1.21489 0.77170 0.98680 1.01603 1.21579 0.96865 0.94082 1.01677 1.18926 0.90868 0.95809 0.95583 1.21677 0.92177 0.93756 1.50601 0.92098 1.25940 0.97450 1.01569 0.94788 1.70080 1.02525 1.32978 1.51587 0.85478 0.77703 0.79621 0.78435 1.19870 1.20876 1.18785 1.67851 1.06479 1.31495 1.19780 0.88600 0.87315 0.90594 0.78736 0.81674 0.75520 0.91626 0.91606 0.92058 0.92040 0.98293 0.98271 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.19 71.23 0.73 -0.48 16 2 C 0.13 2.84 6.78 42.49 0.29 3.12 16 3 C -0.03 -0.74 10.86 84.62 0.92 0.18 16 4 N -0.42 -11.90 10.49 -194.66 -2.04 -13.95 16 5 C -0.04 -1.20 10.49 84.93 0.89 -0.31 16 6 C 0.35 10.50 7.67 133.02 1.02 11.52 16 7 N -0.71 -20.47 5.73 -344.72 -1.97 -22.44 16 8 C 0.13 4.22 4.90 86.38 0.42 4.65 16 9 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 10 C 0.03 1.29 4.97 29.85 0.15 1.44 16 11 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 12 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 13 C 0.00 0.03 5.46 84.65 0.46 0.49 16 14 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 15 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 N -0.53 -14.93 10.45 -180.74 -1.89 -16.82 16 20 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.11 0.74 8.08 -2.38 -0.02 0.72 16 22 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 23 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 24 H 0.17 4.63 6.73 -2.91 -0.02 4.61 16 25 H 0.41 11.12 8.60 -92.71 -0.80 10.33 16 26 H 0.07 2.05 7.95 -2.38 -0.02 2.03 16 27 H 0.07 2.06 7.93 -2.38 -0.02 2.04 16 28 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -65.89 278.78 1.99 -63.90 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.31 Total: 12.11 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.27 Total: -12.97 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -5.62 Total: -108.61 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -65.89 1.99 -63.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308758708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.983 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds