Wall clock time and date at job start Sun Mar 29 2020 22:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46956 * 2 1 4 4 C 1.50704 * 109.46743 * 240.00622 * 2 1 3 5 5 C 1.38291 * 119.97109 * 200.89531 * 4 2 1 6 6 C 1.38245 * 120.11268 * 180.02562 * 5 4 2 7 7 C 1.38168 * 120.05341 * 359.97438 * 6 5 4 8 8 C 1.38712 * 119.94694 * 359.77117 * 7 6 5 9 9 O 1.35903 * 120.06002 * 180.25450 * 8 7 6 10 10 C 1.38126 * 119.97300 * 20.91800 * 4 2 1 11 11 N 1.46494 * 109.47395 * 120.00945 * 2 1 3 12 12 C 1.46501 * 120.00090 * 63.77654 * 11 2 1 13 13 C 1.36940 * 120.00000 * 243.77921 * 11 2 1 14 14 H 1.08001 * 119.99845 * 351.89076 * 13 11 2 15 15 C 1.38807 * 120.00080 * 171.89057 * 13 11 2 16 16 N 1.31619 * 120.00265 * 5.44361 * 15 13 11 17 17 Si 1.86801 * 119.99977 * 185.44377 * 15 13 11 18 18 H 1.48503 * 109.47005 * 90.00090 * 17 15 13 19 19 H 1.48501 * 109.47117 * 210.00087 * 17 15 13 20 20 H 1.48498 * 109.46845 * 330.00071 * 17 15 13 21 21 H 1.08996 * 109.47117 * 299.99376 * 1 2 3 22 22 H 1.09002 * 109.47485 * 59.99566 * 1 2 3 23 23 H 1.09007 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.94015 * 0.04279 * 5 4 2 25 25 H 1.07994 * 119.97424 * 179.97438 * 6 5 4 26 26 H 1.07995 * 120.02776 * 180.02562 * 7 6 5 27 27 H 0.96693 * 114.00167 * 270.25573 * 9 8 7 28 28 H 1.07996 * 120.02968 * 359.97438 * 10 4 2 29 29 H 1.08999 * 109.47060 * 3.34377 * 12 11 2 30 30 H 1.08995 * 109.47247 * 123.34711 * 12 11 2 31 31 H 1.09006 * 109.47200 * 243.34343 * 12 11 2 32 32 H 0.96993 * 120.00210 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 3.3177 -1.2195 -1.2581 6 6 3.7816 -1.8712 -2.3856 7 6 2.9613 -2.0157 -3.4880 8 6 1.6698 -1.5105 -3.4610 9 8 0.8592 -1.6559 -4.5422 10 6 1.2085 -0.8518 -2.3302 11 7 2.0184 -0.6908 1.1960 12 6 1.7340 -2.1152 1.3866 13 6 2.7407 -0.0050 2.1358 14 1 3.0626 1.0066 1.9371 15 6 3.0590 -0.6099 3.3439 16 7 2.7609 -1.8761 3.5446 17 14 3.9106 0.3730 4.6849 18 1 2.8900 1.0086 5.5565 19 1 4.7613 -0.5327 5.4980 20 1 4.7572 1.4243 4.0660 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 3.9601 -1.1081 -0.3971 25 1 4.7860 -2.2676 -2.4048 26 1 3.3240 -2.5252 -4.3684 27 1 0.9211 -0.9321 -5.1803 28 1 0.2047 -0.4540 -2.3083 29 1 1.2043 -2.4998 0.5151 30 1 2.6703 -2.6590 1.5120 31 1 1.1159 -2.2467 2.2748 32 1 2.9831 -2.2988 4.3889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334152758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:12 Heat of formation + Delta-G solvation = 12.652183 kcal Electronic energy + Delta-G solvation = -15087.001135 eV Core-core repulsion = 12627.915003 eV Total energy + Delta-G solvation = -2459.086131 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.48200 -37.10826 -35.35607 -32.65167 -30.22587 -29.05450 -28.22408 -25.98727 -23.98554 -21.99901 -21.78857 -19.47765 -17.58809 -16.88221 -16.06611 -15.27726 -14.88325 -14.64955 -13.90391 -13.56263 -13.37724 -12.70874 -12.37929 -11.90826 -11.71641 -11.50698 -11.14855 -10.94961 -10.81415 -10.71293 -10.43524 -10.21958 -10.07986 -9.85253 -9.72615 -8.53554 -8.40878 -8.09291 -6.91334 -5.62151 -3.06007 1.70440 1.76708 3.39604 3.45191 3.46825 4.06993 4.43415 4.55314 5.27221 5.27448 5.46388 5.56290 5.62806 5.89768 5.93019 6.05225 6.09724 6.32031 6.36980 6.47689 6.63770 6.82412 6.88940 6.91915 6.94560 7.25298 7.28991 7.68778 7.76736 7.89451 7.98893 8.40392 9.29071 9.91382 10.35695 11.36749 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046059 B = 0.007611 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.775709 B = 3678.207232 C = 3901.885009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.206 3.794 3 H 0.076 0.924 4 C -0.064 4.064 5 C -0.096 4.096 6 C -0.113 4.113 7 C -0.160 4.160 8 C 0.087 3.913 9 O -0.503 6.503 10 C -0.148 4.148 11 N -0.600 5.600 12 C 0.174 3.826 13 C -0.248 4.248 14 H 0.074 0.926 15 C -0.003 4.003 16 N -0.916 5.916 17 Si 0.907 3.093 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.282 1.282 21 H 0.056 0.944 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.135 0.865 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.381 0.619 28 H 0.127 0.873 29 H -0.009 1.009 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 2.316 -12.064 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 H 0.093 0.907 4 C -0.067 4.067 5 C -0.114 4.114 6 C -0.131 4.131 7 C -0.179 4.179 8 C 0.043 3.957 9 O -0.312 6.312 10 C -0.167 4.167 11 N -0.323 5.323 12 C 0.030 3.970 13 C -0.377 4.377 14 H 0.092 0.908 15 C -0.200 4.200 16 N -0.563 5.563 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.207 1.207 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.153 0.847 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.236 0.764 28 H 0.145 0.855 29 H 0.009 0.991 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.271 1.672 -11.587 11.776 hybrid contribution 0.577 0.755 0.504 1.076 sum -0.694 2.427 -11.083 11.367 Atomic orbital electron populations 1.22369 0.97927 1.01365 1.00271 1.19252 0.92103 0.94903 0.84046 0.90656 1.20925 0.93485 0.96802 0.95479 1.21268 0.96142 0.96326 0.97670 1.21030 0.99401 0.99440 0.93239 1.21250 0.93487 1.03448 0.99684 1.18449 0.89453 0.99704 0.88046 1.84829 1.64178 1.49240 1.33000 1.21448 1.00609 1.01032 0.93650 1.44063 1.62227 1.06895 1.19091 1.20954 0.98871 0.82414 0.94768 1.19362 1.26924 0.97209 0.94238 0.90797 1.24880 1.01010 0.96254 0.97827 1.70235 1.52164 1.09760 1.24176 0.86199 0.78806 0.78949 0.82263 1.21600 1.21801 1.20721 0.92459 0.93752 0.93052 0.84737 0.86290 0.86465 0.76414 0.85547 0.99060 0.94291 0.93901 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.25 37.16 0.31 -2.59 16 2 C 0.21 4.19 3.06 -69.08 -0.21 3.98 16 3 H 0.08 1.51 7.78 -51.93 -0.40 1.11 16 4 C -0.06 -1.21 4.66 -104.64 -0.49 -1.70 16 5 C -0.10 -1.80 8.94 -39.56 -0.35 -2.16 16 6 C -0.11 -1.82 10.04 -39.60 -0.40 -2.21 16 7 C -0.16 -2.42 9.99 -39.43 -0.39 -2.81 16 8 C 0.09 1.36 6.71 -39.21 -0.26 1.10 16 9 O -0.50 -6.77 13.50 -19.43 -0.26 -7.04 16 10 C -0.15 -2.47 9.07 -39.43 -0.36 -2.83 16 11 N -0.60 -14.82 2.11 -174.82 -0.37 -15.18 16 12 C 0.17 4.43 7.76 59.85 0.46 4.89 16 13 C -0.25 -6.68 9.80 -15.06 -0.15 -6.82 16 14 H 0.07 1.92 7.67 -52.49 -0.40 1.51 16 15 C 0.00 -0.09 5.46 -17.43 -0.10 -0.19 16 16 N -0.92 -26.54 9.47 55.49 0.53 -26.02 16 17 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.04 0.67 6.66 -51.93 -0.35 0.32 16 23 H 0.05 0.97 7.36 -51.92 -0.38 0.58 16 24 H 0.13 2.82 7.68 -52.49 -0.40 2.42 16 25 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 27 H 0.38 3.12 9.06 45.56 0.41 3.53 16 28 H 0.13 1.94 5.99 -52.49 -0.31 1.62 16 29 H -0.01 -0.22 6.85 -51.93 -0.36 -0.57 16 30 H 0.04 1.07 7.18 -51.93 -0.37 0.70 16 31 H 0.04 1.19 6.92 -51.93 -0.36 0.83 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -30.15 265.40 -6.40 -36.54 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.33 Total: 2.28 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.94 Total: -11.35 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.16 Total: -41.20 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.26 Total: -7.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.15 -6.40 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334152758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.196 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds