Wall clock time and date at job start Sun Mar 29 2020 22:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46956 * 2 1 4 4 C 1.50704 * 109.46743 * 240.00622 * 2 1 3 5 5 C 1.38291 * 119.97109 * 200.89531 * 4 2 1 6 6 C 1.38245 * 120.11268 * 180.02562 * 5 4 2 7 7 C 1.38168 * 120.05341 * 359.97438 * 6 5 4 8 8 C 1.38712 * 119.94694 * 359.77117 * 7 6 5 9 9 O 1.35903 * 120.06002 * 180.25450 * 8 7 6 10 10 C 1.38126 * 119.97300 * 20.91800 * 4 2 1 11 11 N 1.46494 * 109.47395 * 120.00945 * 2 1 3 12 12 C 1.46501 * 120.00090 * 63.77654 * 11 2 1 13 13 C 1.36940 * 120.00000 * 243.77921 * 11 2 1 14 14 H 1.08001 * 119.99845 * 351.89076 * 13 11 2 15 15 C 1.38807 * 120.00080 * 171.89057 * 13 11 2 16 16 N 1.31619 * 120.00265 * 5.44361 * 15 13 11 17 17 Si 1.86801 * 119.99977 * 185.44377 * 15 13 11 18 18 H 1.48503 * 109.47005 * 90.00090 * 17 15 13 19 19 H 1.48501 * 109.47117 * 210.00087 * 17 15 13 20 20 H 1.48498 * 109.46845 * 330.00071 * 17 15 13 21 21 H 1.08996 * 109.47117 * 299.99376 * 1 2 3 22 22 H 1.09002 * 109.47485 * 59.99566 * 1 2 3 23 23 H 1.09007 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.94015 * 0.04279 * 5 4 2 25 25 H 1.07994 * 119.97424 * 179.97438 * 6 5 4 26 26 H 1.07995 * 120.02776 * 180.02562 * 7 6 5 27 27 H 0.96693 * 114.00167 * 270.25573 * 9 8 7 28 28 H 1.07996 * 120.02968 * 359.97438 * 10 4 2 29 29 H 1.08999 * 109.47060 * 3.34377 * 12 11 2 30 30 H 1.08995 * 109.47247 * 123.34711 * 12 11 2 31 31 H 1.09006 * 109.47200 * 243.34343 * 12 11 2 32 32 H 0.96993 * 120.00210 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 3.3177 -1.2195 -1.2581 6 6 3.7816 -1.8712 -2.3856 7 6 2.9613 -2.0157 -3.4880 8 6 1.6698 -1.5105 -3.4610 9 8 0.8592 -1.6559 -4.5422 10 6 1.2085 -0.8518 -2.3302 11 7 2.0184 -0.6908 1.1960 12 6 1.7340 -2.1152 1.3866 13 6 2.7407 -0.0050 2.1358 14 1 3.0626 1.0066 1.9371 15 6 3.0590 -0.6099 3.3439 16 7 2.7609 -1.8761 3.5446 17 14 3.9106 0.3730 4.6849 18 1 2.8900 1.0086 5.5565 19 1 4.7613 -0.5327 5.4980 20 1 4.7572 1.4243 4.0660 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 3.9601 -1.1081 -0.3971 25 1 4.7860 -2.2676 -2.4048 26 1 3.3240 -2.5252 -4.3684 27 1 0.9211 -0.9321 -5.1803 28 1 0.2047 -0.4540 -2.3083 29 1 1.2043 -2.4998 0.5151 30 1 2.6703 -2.6590 1.5120 31 1 1.1159 -2.2467 2.2748 32 1 2.9831 -2.2988 4.3889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334152758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:12 Heat of formation + Delta-G solvation = -6.393270 kcal Electronic energy + Delta-G solvation = -15087.827007 eV Core-core repulsion = 12627.915003 eV Total energy + Delta-G solvation = -2459.912004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77772 -38.51739 -36.89069 -34.41195 -31.94575 -30.39610 -29.73696 -28.07083 -25.64589 -23.61067 -23.11720 -20.99620 -18.93437 -18.80015 -17.36480 -17.01004 -16.35270 -15.92012 -15.70894 -15.09624 -14.66567 -14.51083 -14.16405 -13.52108 -13.11568 -13.07767 -12.70308 -12.68172 -12.49820 -12.34696 -12.21268 -12.09166 -11.84048 -11.64605 -11.24128 -10.63105 -9.70717 -9.42280 -8.92007 -7.72657 -5.17066 0.42568 0.47737 1.47643 1.48985 1.57236 2.51264 2.81180 3.32543 3.38099 3.70298 3.98621 4.12225 4.28881 4.49118 4.52288 4.59918 4.69985 4.80266 4.97182 5.08140 5.14177 5.17501 5.39939 5.52186 5.54099 5.58117 5.65388 5.85533 5.90606 6.02336 6.32467 6.95008 7.19217 7.91470 8.32034 9.25800 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046059 B = 0.007611 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.775709 B = 3678.207232 C = 3901.885009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.199 3.801 3 H 0.074 0.926 4 C -0.079 4.079 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.155 4.155 8 C 0.098 3.902 9 O -0.506 6.506 10 C -0.151 4.151 11 N -0.612 5.612 12 C 0.201 3.799 13 C -0.252 4.252 14 H 0.080 0.920 15 C -0.062 4.062 16 N -0.947 5.947 17 Si 0.972 3.028 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.269 1.269 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.041 0.959 24 H 0.101 0.899 25 H 0.139 0.861 26 H 0.147 0.853 27 H 0.408 0.592 28 H 0.142 0.858 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.013 0.987 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 2.996 -14.254 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.093 3.907 3 H 0.091 0.909 4 C -0.081 4.081 5 C -0.140 4.140 6 C -0.128 4.128 7 C -0.173 4.173 8 C 0.053 3.947 9 O -0.319 6.319 10 C -0.170 4.170 11 N -0.335 5.335 12 C 0.056 3.944 13 C -0.381 4.381 14 H 0.098 0.902 15 C -0.255 4.255 16 N -0.597 5.597 17 Si 0.801 3.199 18 H -0.215 1.215 19 H -0.225 1.225 20 H -0.194 1.194 21 H 0.064 0.936 22 H 0.099 0.901 23 H 0.061 0.939 24 H 0.119 0.881 25 H 0.157 0.843 26 H 0.165 0.835 27 H 0.267 0.733 28 H 0.159 0.841 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.032 0.968 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.611 2.398 -13.835 14.133 hybrid contribution 0.658 0.556 0.997 1.317 sum -0.953 2.954 -12.838 13.208 Atomic orbital electron populations 1.22231 0.95926 1.01129 1.01529 1.19456 0.93455 0.94643 0.83193 0.90851 1.20659 0.93944 0.97967 0.95580 1.21104 0.96227 0.98740 0.97941 1.21217 1.00580 0.98464 0.92519 1.21553 0.93121 1.02628 1.00043 1.18485 0.89585 0.98270 0.88333 1.84768 1.63595 1.50735 1.32818 1.21526 1.00868 1.01265 0.93315 1.44210 1.62331 1.06615 1.20321 1.20473 0.96762 0.83132 0.94001 1.19731 1.26308 0.97443 0.94645 0.90176 1.25647 1.02572 0.97203 1.00029 1.70433 1.53855 1.11188 1.24216 0.85178 0.77721 0.77630 0.79395 1.21492 1.22463 1.19388 0.93579 0.90065 0.93943 0.88076 0.84309 0.83537 0.73305 0.84084 0.97428 0.97302 0.96835 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 8.25 71.98 0.59 -4.62 16 2 C 0.20 8.06 3.06 44.25 0.14 8.20 16 3 H 0.07 2.93 7.78 -2.39 -0.02 2.92 16 4 C -0.08 -2.91 4.66 -19.88 -0.09 -3.00 16 5 C -0.12 -4.58 8.94 22.28 0.20 -4.38 16 6 C -0.11 -3.34 10.04 22.25 0.22 -3.12 16 7 C -0.16 -4.16 9.99 22.37 0.22 -3.93 16 8 C 0.10 2.70 6.71 22.51 0.15 2.85 16 9 O -0.51 -11.39 13.50 -92.45 -1.25 -12.64 16 10 C -0.15 -4.64 9.07 22.37 0.20 -4.43 16 11 N -0.61 -30.81 2.11 -706.99 -1.49 -32.30 16 12 C 0.20 10.57 7.76 127.77 0.99 11.56 16 13 C -0.25 -13.77 9.80 84.03 0.82 -12.95 16 14 H 0.08 4.18 7.67 -2.91 -0.02 4.16 16 15 C -0.06 -3.48 5.46 84.86 0.46 -3.02 16 16 N -0.95 -56.82 9.47 21.65 0.20 -56.62 16 17 Si 0.97 45.58 29.56 68.60 2.03 47.61 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.08 2.21 6.66 -2.39 -0.02 2.20 16 23 H 0.04 1.54 7.36 -2.38 -0.02 1.52 16 24 H 0.10 4.43 7.68 -2.91 -0.02 4.41 16 25 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 26 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 27 H 0.41 4.72 9.06 -74.06 -0.67 4.05 16 28 H 0.14 3.83 5.99 -2.91 -0.02 3.81 16 29 H 0.01 0.35 6.85 -2.39 -0.02 0.33 16 30 H 0.01 0.49 7.18 -2.39 -0.02 0.47 16 31 H 0.01 0.77 6.92 -2.38 -0.02 0.75 16 32 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -65.58 265.40 3.86 -61.72 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.45 Total: 9.06 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 3.91 Total: -16.83 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -1.28 Total: -88.92 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.25 Total: -12.64 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -65.58 3.86 -61.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334152758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.326 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds