Wall clock time and date at job start Sun Mar 29 2020 22:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47400 * 2 1 4 4 C 1.50706 * 109.46390 * 119.99809 * 2 1 3 5 5 C 1.38289 * 119.97234 * 72.93549 * 4 2 1 6 6 C 1.38246 * 120.10999 * 179.71948 * 5 4 2 7 7 C 1.38164 * 120.05417 * 0.54581 * 6 5 4 8 8 C 1.38713 * 119.94557 * 359.72689 * 7 6 5 9 9 O 1.35903 * 120.05351 * 179.97438 * 8 7 6 10 10 C 1.38121 * 119.97216 * 253.20005 * 4 2 1 11 11 N 1.46496 * 109.46967 * 239.99416 * 2 1 3 12 12 C 1.46502 * 119.99477 * 174.57325 * 11 2 1 13 13 C 1.36935 * 120.00353 * 354.57959 * 11 2 1 14 14 H 1.07996 * 120.00133 * 17.21470 * 13 11 2 15 15 C 1.38810 * 119.99965 * 197.22224 * 13 11 2 16 16 N 1.31622 * 120.00188 * 17.04987 * 15 13 11 17 17 Si 1.86804 * 119.99885 * 197.05062 * 15 13 11 18 18 H 1.48503 * 109.47135 * 89.99807 * 17 15 13 19 19 H 1.48502 * 109.47129 * 209.99750 * 17 15 13 20 20 H 1.48496 * 109.47119 * 329.99694 * 17 15 13 21 21 H 1.09000 * 109.47400 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46954 * 300.00282 * 1 2 3 23 23 H 1.09008 * 109.46441 * 59.99758 * 1 2 3 24 24 H 1.08000 * 119.94132 * 359.97436 * 5 4 2 25 25 H 1.07996 * 119.97324 * 180.25255 * 6 5 4 26 26 H 1.08005 * 120.02571 * 179.69864 * 7 6 5 27 27 H 0.96698 * 114.00309 * 270.02294 * 9 8 7 28 28 H 1.08002 * 120.02764 * 0.02716 * 10 4 2 29 29 H 1.08996 * 109.47579 * 354.54903 * 12 11 2 30 30 H 1.09009 * 109.47089 * 114.55584 * 12 11 2 31 31 H 1.09007 * 109.47169 * 234.54824 * 12 11 2 32 32 H 0.97001 * 120.00137 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.9310 -2.0865 1.3236 6 6 2.3960 -2.7416 2.4486 7 6 2.9529 -2.0216 3.4880 8 6 3.0505 -0.6407 3.3996 9 8 3.5975 0.0697 4.4208 10 6 2.5882 0.0139 2.2669 11 7 2.0183 -0.6907 -1.1961 12 6 3.4533 -0.7216 -1.4895 13 6 1.1335 -1.3074 -2.0399 14 1 0.0828 -1.0622 -1.9936 15 6 1.5871 -2.2477 -2.9546 16 7 2.7743 -2.7952 -2.8019 17 14 0.5126 -2.7362 -4.4025 18 1 0.7982 -1.8433 -5.5543 19 1 0.8030 -4.1422 -4.7823 20 1 -0.9173 -2.6114 -4.0221 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8901 24 1 1.4916 -2.6506 0.5142 25 1 2.3195 -3.8167 2.5172 26 1 3.3116 -2.5335 4.3688 27 1 2.9584 0.3552 5.0880 28 1 2.6628 1.0890 2.1958 29 1 3.9853 -0.1022 -0.7674 30 1 3.8155 -1.7477 -1.4246 31 1 3.6270 -0.3380 -2.4949 32 1 3.0914 -3.4520 -3.4413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334152759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:20 Heat of formation + Delta-G solvation = 7.373401 kcal Electronic energy + Delta-G solvation = -15139.405556 eV Core-core repulsion = 12680.090520 eV Total energy + Delta-G solvation = -2459.315036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35601 -37.07484 -35.36480 -32.36813 -30.15954 -29.25761 -28.48505 -25.68607 -23.63283 -22.12406 -21.89038 -19.77516 -17.49646 -16.23485 -15.90890 -15.40086 -15.09687 -14.56198 -13.80018 -13.63209 -13.19021 -13.05640 -12.22674 -11.77841 -11.61147 -11.47188 -11.25083 -10.98214 -10.81775 -10.72843 -10.46844 -10.27795 -9.96026 -9.80448 -9.64428 -8.61284 -8.33720 -8.01270 -6.81128 -5.60939 -3.13509 1.80033 1.85362 3.39307 3.45956 3.47007 4.15363 4.48516 4.58808 5.30111 5.35859 5.47087 5.52081 5.74471 5.99286 6.02170 6.07616 6.18598 6.35109 6.45744 6.49576 6.71611 6.81360 6.86359 6.93479 7.06355 7.35379 7.36956 7.40867 7.82167 7.93198 7.96752 8.42488 9.25070 9.90163 10.36503 11.33314 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043710 B = 0.007981 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.438900 B = 3507.408440 C = 3641.132725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.205 3.795 3 H 0.041 0.959 4 C -0.068 4.068 5 C -0.086 4.086 6 C -0.113 4.113 7 C -0.161 4.161 8 C 0.086 3.914 9 O -0.504 6.504 10 C -0.149 4.149 11 N -0.592 5.592 12 C 0.145 3.855 13 C -0.254 4.254 14 H 0.079 0.921 15 C -0.002 4.002 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.280 1.280 21 H 0.063 0.937 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.136 0.864 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.380 0.620 28 H 0.118 0.882 29 H 0.001 0.999 30 H 0.072 0.928 31 H 0.014 0.986 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 3.436 10.456 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.097 3.903 3 H 0.059 0.941 4 C -0.071 4.071 5 C -0.104 4.104 6 C -0.132 4.132 7 C -0.180 4.180 8 C 0.042 3.958 9 O -0.313 6.313 10 C -0.168 4.168 11 N -0.314 5.314 12 C 0.001 3.999 13 C -0.383 4.383 14 H 0.097 0.903 15 C -0.200 4.200 16 N -0.549 5.549 17 Si 0.733 3.267 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.206 1.206 21 H 0.082 0.918 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.154 0.846 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.235 0.765 28 H 0.136 0.864 29 H 0.020 0.980 30 H 0.090 0.910 31 H 0.032 0.968 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.728 3.226 10.002 10.650 hybrid contribution -0.700 -0.302 -0.509 0.917 sum -2.429 2.924 9.493 10.225 Atomic orbital electron populations 1.21850 0.94950 1.02309 1.00076 1.19448 0.93397 0.93514 0.83910 0.94137 1.21087 0.95943 0.94681 0.95430 1.21236 0.97867 0.94426 0.96892 1.21034 0.98805 0.99488 0.93823 1.21217 1.03038 0.93505 1.00192 1.18407 0.98346 0.89885 0.89163 1.84830 1.37338 1.73645 1.35482 1.21287 1.01150 0.99932 0.94444 1.44131 1.03671 1.62138 1.21476 1.21120 0.82509 1.01062 0.95225 1.19357 0.91329 1.16323 1.11299 0.90321 1.24929 0.97081 0.97460 1.00557 1.70026 1.19165 1.29394 1.36288 0.86281 0.79812 0.77367 0.83272 1.21676 1.21936 1.20573 0.91788 0.94009 0.92153 0.84626 0.86391 0.86572 0.76539 0.86364 0.97996 0.90963 0.96765 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 7.77 37.16 0.29 -2.17 16 2 C 0.21 4.21 3.10 -69.08 -0.21 3.99 16 3 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 4 C -0.07 -1.33 4.54 -104.64 -0.47 -1.80 16 5 C -0.09 -1.71 9.19 -39.56 -0.36 -2.07 16 6 C -0.11 -1.95 10.04 -39.61 -0.40 -2.35 16 7 C -0.16 -2.58 9.99 -39.43 -0.39 -2.97 16 8 C 0.09 1.41 6.71 -39.22 -0.26 1.14 16 9 O -0.50 -7.11 13.50 -19.44 -0.26 -7.38 16 10 C -0.15 -2.60 9.61 -39.44 -0.38 -2.98 16 11 N -0.59 -14.57 2.55 -174.81 -0.45 -15.02 16 12 C 0.15 3.67 8.88 59.85 0.53 4.20 16 13 C -0.25 -6.68 8.85 -15.06 -0.13 -6.81 16 14 H 0.08 1.99 5.76 -52.49 -0.30 1.69 16 15 C 0.00 -0.06 5.23 -17.43 -0.09 -0.15 16 16 N -0.90 -25.85 10.44 55.49 0.58 -25.27 16 17 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.06 1.24 7.37 -51.93 -0.38 0.85 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 1.11 7.46 -51.92 -0.39 0.72 16 24 H 0.14 3.05 7.93 -52.49 -0.42 2.63 16 25 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 27 H 0.38 3.33 9.06 45.56 0.41 3.74 16 28 H 0.12 1.88 7.99 -52.49 -0.42 1.46 16 29 H 0.00 0.03 7.90 -51.93 -0.41 -0.38 16 30 H 0.07 2.01 6.16 -51.92 -0.32 1.69 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 269.57 15.07 4.06 4.06 Total: -1.00 -29.80 269.57 -6.45 -36.25 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.46 Total: 2.77 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.89 Total: -11.97 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.13 Total: -40.29 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.26 Total: -7.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.80 -6.45 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334152759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.621 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds