Wall clock time and date at job start Sun Mar 29 2020 22:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47400 * 2 1 4 4 C 1.50706 * 109.46390 * 119.99809 * 2 1 3 5 5 C 1.38289 * 119.97234 * 72.93549 * 4 2 1 6 6 C 1.38246 * 120.10999 * 179.71948 * 5 4 2 7 7 C 1.38164 * 120.05417 * 0.54581 * 6 5 4 8 8 C 1.38713 * 119.94557 * 359.72689 * 7 6 5 9 9 O 1.35903 * 120.05351 * 179.97438 * 8 7 6 10 10 C 1.38121 * 119.97216 * 253.20005 * 4 2 1 11 11 N 1.46496 * 109.46967 * 239.99416 * 2 1 3 12 12 C 1.46502 * 119.99477 * 174.57325 * 11 2 1 13 13 C 1.36935 * 120.00353 * 354.57959 * 11 2 1 14 14 H 1.07996 * 120.00133 * 17.21470 * 13 11 2 15 15 C 1.38810 * 119.99965 * 197.22224 * 13 11 2 16 16 N 1.31622 * 120.00188 * 17.04987 * 15 13 11 17 17 Si 1.86804 * 119.99885 * 197.05062 * 15 13 11 18 18 H 1.48503 * 109.47135 * 89.99807 * 17 15 13 19 19 H 1.48502 * 109.47129 * 209.99750 * 17 15 13 20 20 H 1.48496 * 109.47119 * 329.99694 * 17 15 13 21 21 H 1.09000 * 109.47400 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46954 * 300.00282 * 1 2 3 23 23 H 1.09008 * 109.46441 * 59.99758 * 1 2 3 24 24 H 1.08000 * 119.94132 * 359.97436 * 5 4 2 25 25 H 1.07996 * 119.97324 * 180.25255 * 6 5 4 26 26 H 1.08005 * 120.02571 * 179.69864 * 7 6 5 27 27 H 0.96698 * 114.00309 * 270.02294 * 9 8 7 28 28 H 1.08002 * 120.02764 * 0.02716 * 10 4 2 29 29 H 1.08996 * 109.47579 * 354.54903 * 12 11 2 30 30 H 1.09009 * 109.47089 * 114.55584 * 12 11 2 31 31 H 1.09007 * 109.47169 * 234.54824 * 12 11 2 32 32 H 0.97001 * 120.00137 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.9310 -2.0865 1.3236 6 6 2.3960 -2.7416 2.4486 7 6 2.9529 -2.0216 3.4880 8 6 3.0505 -0.6407 3.3996 9 8 3.5975 0.0697 4.4208 10 6 2.5882 0.0139 2.2669 11 7 2.0183 -0.6907 -1.1961 12 6 3.4533 -0.7216 -1.4895 13 6 1.1335 -1.3074 -2.0399 14 1 0.0828 -1.0622 -1.9936 15 6 1.5871 -2.2477 -2.9546 16 7 2.7743 -2.7952 -2.8019 17 14 0.5126 -2.7362 -4.4025 18 1 0.7982 -1.8433 -5.5543 19 1 0.8030 -4.1422 -4.7823 20 1 -0.9173 -2.6114 -4.0221 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8901 24 1 1.4916 -2.6506 0.5142 25 1 2.3195 -3.8167 2.5172 26 1 3.3116 -2.5335 4.3688 27 1 2.9584 0.3552 5.0880 28 1 2.6628 1.0890 2.1958 29 1 3.9853 -0.1022 -0.7674 30 1 3.8155 -1.7477 -1.4246 31 1 3.6270 -0.3380 -2.4949 32 1 3.0914 -3.4520 -3.4413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334152759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:20 Heat of formation + Delta-G solvation = -11.469514 kcal Electronic energy + Delta-G solvation = -15140.222646 eV Core-core repulsion = 12680.090520 eV Total energy + Delta-G solvation = -2460.132127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70624 -38.53602 -36.90708 -34.15433 -31.86041 -30.78703 -29.94751 -27.68002 -25.33498 -23.68459 -23.34897 -21.33054 -18.85019 -18.16330 -17.30004 -17.03802 -16.60323 -16.00060 -15.48561 -15.19987 -15.02827 -14.41042 -14.01871 -13.37545 -13.05674 -13.01391 -12.94636 -12.68251 -12.67153 -12.26289 -12.16134 -12.07716 -11.75379 -11.54531 -11.25983 -10.66020 -9.69703 -9.39826 -8.81264 -7.66567 -5.20824 0.45582 0.49369 1.48124 1.50412 1.57611 2.54169 2.83539 3.30531 3.40529 3.69608 4.03218 4.11630 4.35187 4.50299 4.54846 4.64212 4.72184 4.78448 4.96899 5.06717 5.12496 5.20722 5.32669 5.43816 5.53333 5.63593 5.73086 5.80749 5.96798 6.04996 6.39263 6.95003 7.19604 7.92947 8.35458 9.26728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043710 B = 0.007981 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.438900 B = 3507.408440 C = 3641.132725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.198 3.802 3 H 0.052 0.948 4 C -0.080 4.080 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.156 4.156 8 C 0.097 3.903 9 O -0.507 6.507 10 C -0.153 4.153 11 N -0.604 5.604 12 C 0.161 3.839 13 C -0.250 4.250 14 H 0.088 0.912 15 C -0.060 4.060 16 N -0.935 5.935 17 Si 0.961 3.039 18 H -0.292 1.292 19 H -0.300 1.300 20 H -0.266 1.266 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.135 0.865 26 H 0.146 0.854 27 H 0.408 0.592 28 H 0.135 0.865 29 H 0.021 0.979 30 H 0.044 0.956 31 H -0.008 1.008 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 4.387 12.429 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 H 0.069 0.931 4 C -0.082 4.082 5 C -0.129 4.129 6 C -0.131 4.131 7 C -0.175 4.175 8 C 0.053 3.947 9 O -0.319 6.319 10 C -0.172 4.172 11 N -0.326 5.326 12 C 0.016 3.984 13 C -0.380 4.380 14 H 0.106 0.894 15 C -0.254 4.254 16 N -0.583 5.583 17 Si 0.791 3.209 18 H -0.220 1.220 19 H -0.227 1.227 20 H -0.191 1.191 21 H 0.065 0.935 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.116 0.884 25 H 0.152 0.848 26 H 0.163 0.837 27 H 0.266 0.734 28 H 0.152 0.848 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.011 0.989 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.269 4.211 12.023 12.940 hybrid contribution -0.526 -0.517 -0.934 1.190 sum -2.794 3.693 11.090 12.018 Atomic orbital electron populations 1.21770 0.93457 1.01629 1.01501 1.19658 0.94765 0.93427 0.82995 0.93068 1.20834 0.97179 0.94435 0.95795 1.21015 0.99944 0.94757 0.97216 1.21205 0.98219 1.00509 0.93198 1.21506 1.01871 0.93589 1.00489 1.18436 0.96730 0.90159 0.89362 1.84766 1.38339 1.73295 1.35543 1.21408 1.00832 1.00711 0.94265 1.44295 1.03087 1.62076 1.23189 1.20786 0.83566 0.99498 0.94531 1.19704 0.91954 1.15281 1.11069 0.89447 1.25645 0.98398 0.98279 1.03077 1.70213 1.20850 1.30373 1.36904 0.85330 0.79051 0.76265 0.80252 1.21985 1.22727 1.19095 0.93460 0.90771 0.92477 0.88388 0.84760 0.83667 0.73357 0.84751 0.96072 0.93831 0.98918 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 7.77 71.98 0.56 -3.92 16 2 C 0.20 7.96 3.10 44.25 0.14 8.10 16 3 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 4 C -0.08 -3.02 4.54 -19.88 -0.09 -3.11 16 5 C -0.11 -4.41 9.19 22.28 0.20 -4.21 16 6 C -0.11 -3.74 10.04 22.25 0.22 -3.52 16 7 C -0.16 -4.50 9.99 22.37 0.22 -4.28 16 8 C 0.10 2.85 6.71 22.51 0.15 3.00 16 9 O -0.51 -12.10 13.50 -92.46 -1.25 -13.35 16 10 C -0.15 -4.94 9.61 22.36 0.21 -4.72 16 11 N -0.60 -30.03 2.55 -706.96 -1.80 -31.84 16 12 C 0.16 8.34 8.88 127.77 1.13 9.47 16 13 C -0.25 -13.32 8.85 84.03 0.74 -12.58 16 14 H 0.09 4.42 5.76 -2.91 -0.02 4.40 16 15 C -0.06 -3.32 5.23 84.86 0.44 -2.87 16 16 N -0.94 -55.42 10.44 21.65 0.23 -55.19 16 17 Si 0.96 45.15 29.59 68.60 2.03 47.18 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H 0.05 1.81 7.37 -2.39 -0.02 1.80 16 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.06 2.03 7.46 -2.38 -0.02 2.01 16 24 H 0.10 4.61 7.93 -2.91 -0.02 4.59 16 25 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 26 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 27 H 0.41 5.20 9.06 -74.06 -0.67 4.52 16 28 H 0.13 3.84 7.99 -2.91 -0.02 3.81 16 29 H 0.02 0.96 7.90 -2.39 -0.02 0.94 16 30 H 0.04 2.52 6.16 -2.38 -0.01 2.51 16 31 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 32 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -64.43 269.57 3.59 -60.84 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.44 Total: 10.99 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 3.94 Total: -18.63 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -1.58 Total: -87.03 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.25 Total: -13.35 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.43 3.59 -60.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334152759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.374 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds