Wall clock time and date at job start Sun Mar 29 2020 22:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00380 * 2 1 4 4 H 1.48493 * 109.47170 * 264.64882 * 3 2 1 5 5 H 1.48496 * 109.46743 * 24.65152 * 3 2 1 6 6 H 1.48496 * 109.47102 * 144.64968 * 3 2 1 7 7 C 1.38816 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99747 * 34.03314 * 7 2 1 9 9 N 1.36933 * 120.00125 * 214.02891 * 7 2 1 10 10 C 1.46921 * 120.63236 * 40.96400 * 9 7 2 11 11 C 1.53199 * 108.77645 * 126.41181 * 10 9 7 12 12 C 1.53038 * 109.31280 * 54.63744 * 11 10 9 13 13 C 1.53039 * 109.53587 * 298.63466 * 12 11 10 14 14 C 1.46931 * 120.63050 * 220.98676 * 9 7 2 15 15 H 1.08992 * 109.58945 * 113.66114 * 14 9 7 16 16 C 1.50699 * 109.58529 * 353.37178 * 14 9 7 17 17 C 1.39872 * 125.89412 * 116.30165 * 16 14 9 18 18 C 1.35322 * 107.91902 * 179.86368 * 17 16 14 19 19 N 1.34943 * 107.74318 * 0.39734 * 18 17 16 20 20 H 0.97002 * 126.03376 * 179.75444 * 19 18 17 21 21 N 1.30830 * 125.90139 * 296.61216 * 16 14 9 22 22 H 0.97002 * 119.99799 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.58520 * 6.62676 * 10 9 7 24 24 H 1.09002 * 109.70670 * 246.26625 * 10 9 7 25 25 H 1.08997 * 109.49362 * 174.58897 * 11 10 9 26 26 H 1.08998 * 109.49224 * 294.68175 * 11 10 9 27 27 H 1.08998 * 109.46228 * 58.65161 * 12 11 10 28 28 H 1.09000 * 109.46196 * 178.61862 * 12 11 10 29 29 H 1.09006 * 109.50032 * 301.41569 * 13 12 11 30 30 H 1.09002 * 109.49774 * 181.31761 * 13 12 11 31 31 H 1.07999 * 126.04251 * 359.97438 * 17 16 14 32 32 H 1.07997 * 126.12861 * 180.14501 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6108 1.9811 -1.3939 5 1 1.3958 2.6826 0.5840 6 1 3.4866 1.4753 0.8100 7 6 2.0102 -1.2022 0.0005 8 1 1.6088 -2.0576 -0.5226 9 7 3.2036 -1.3035 0.6642 10 6 3.3837 -0.6766 1.9807 11 6 3.8832 -1.7366 2.9675 12 6 5.1460 -2.3949 2.4069 13 6 4.8176 -3.0855 1.0812 14 6 4.3287 -2.0408 0.0731 15 1 5.1374 -1.3482 -0.1598 16 6 3.8744 -2.7296 -1.1880 17 6 4.3436 -2.4685 -2.4796 18 6 3.6938 -3.2932 -3.3332 19 7 2.8373 -4.0431 -2.6087 20 1 2.2365 -4.7204 -2.9570 21 7 2.9691 -3.6709 -1.2646 22 1 -0.4850 0.8401 0.0004 23 1 2.4316 -0.2746 2.3273 24 1 4.1152 0.1281 1.9076 25 1 4.1124 -1.2649 3.9230 26 1 3.1114 -2.4929 3.1105 27 1 5.9089 -1.6343 2.2408 28 1 5.5175 -3.1324 3.1183 29 1 4.0370 -3.8292 1.2420 30 1 5.7119 -3.5740 0.6942 31 1 5.0935 -1.7390 -2.7479 32 1 3.8326 -3.3398 -4.4032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334283864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:53 Heat of formation + Delta-G solvation = 97.459607 kcal Electronic energy + Delta-G solvation = -15593.737341 eV Core-core repulsion = 13170.621486 eV Total energy + Delta-G solvation = -2423.115854 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51193 -37.52775 -32.92792 -32.10612 -30.56541 -29.31070 -28.96077 -25.21983 -22.87062 -22.04032 -20.90185 -19.38196 -18.68519 -17.57311 -16.32207 -15.09001 -14.37751 -13.90683 -13.57362 -13.47296 -13.03575 -12.93695 -12.83884 -12.64397 -12.21911 -11.55308 -11.30630 -10.73123 -10.55112 -10.40907 -10.07104 -10.01159 -9.73894 -9.63138 -9.38165 -8.58662 -8.19895 -8.08571 -6.58743 -5.93044 -3.23375 2.55439 3.46748 3.49650 3.52626 3.58897 3.64187 4.70216 5.10626 5.27428 5.41833 5.44497 5.60747 5.65468 5.71837 5.96177 6.19451 6.24209 6.32801 6.37018 6.49247 6.53911 6.60737 6.64977 6.76709 6.93815 7.00902 7.19916 7.30207 7.88527 8.17129 8.44149 8.62703 9.17036 9.86916 10.32900 11.22728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.015110 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.119007 B = 1852.686953 C = 2666.872473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.046 3.954 3 Si 0.838 3.162 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.258 1.258 7 C -0.265 4.265 8 H 0.087 0.913 9 N -0.591 5.591 10 C 0.146 3.854 11 C -0.138 4.138 12 C -0.109 4.109 13 C -0.124 4.124 14 C 0.243 3.757 15 H 0.044 0.956 16 C 0.114 3.886 17 C -0.264 4.264 18 C 0.040 3.960 19 N -0.488 5.488 20 H 0.431 0.569 21 N -0.263 5.263 22 H 0.260 0.740 23 H 0.066 0.934 24 H 0.025 0.975 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.138 0.862 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.833 -5.640 -2.049 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.155 4.155 3 Si 0.665 3.335 4 H -0.218 1.218 5 H -0.226 1.226 6 H -0.183 1.183 7 C -0.393 4.393 8 H 0.105 0.895 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.178 4.178 12 C -0.147 4.147 13 C -0.164 4.164 14 C 0.136 3.864 15 H 0.062 0.938 16 C -0.054 4.054 17 C -0.294 4.294 18 C -0.107 4.107 19 N -0.195 5.195 20 H 0.273 0.727 21 N -0.086 5.086 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.846 -6.265 -1.423 10.933 hybrid contribution 0.573 1.367 -0.981 1.778 sum 9.418 -4.898 -2.404 10.885 Atomic orbital electron populations 1.70078 1.06385 1.26631 1.49571 1.25595 0.94765 0.97389 0.97752 0.87438 0.81739 0.85911 0.78378 1.21781 1.22623 1.18315 1.18904 0.93941 0.95803 1.30641 0.89528 1.44253 1.10276 1.61710 1.15350 1.21308 0.99215 0.92849 0.84615 1.22066 0.97427 1.00121 0.98143 1.21391 0.97709 0.98975 0.96589 1.21956 1.00182 0.98651 0.95603 1.19032 0.90348 0.90875 0.86175 0.93810 1.22079 0.93602 0.94260 0.95506 1.21348 1.09001 1.06671 0.92384 1.22329 0.94526 0.95878 0.97939 1.46391 1.33729 1.33273 1.06109 0.72655 1.77414 1.19140 1.18214 0.93825 0.93004 0.91522 0.95756 0.93185 0.91945 0.92792 0.93244 0.91329 0.93051 0.84386 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.97 55.49 0.78 -26.86 16 2 C 0.05 1.36 4.84 -17.43 -0.08 1.28 16 3 Si 0.84 21.93 27.34 -169.99 -4.65 17.29 16 4 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.26 -6.39 5.14 56.52 0.29 -6.10 16 7 C -0.26 -7.58 8.70 -15.06 -0.13 -7.71 16 8 H 0.09 2.71 6.14 -52.49 -0.32 2.39 16 9 N -0.59 -14.47 2.47 -166.08 -0.41 -14.88 16 10 C 0.15 3.24 4.56 -3.71 -0.02 3.22 16 11 C -0.14 -2.54 6.08 -26.61 -0.16 -2.71 16 12 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 13 C -0.12 -2.26 5.35 -26.61 -0.14 -2.40 16 14 C 0.24 5.13 3.38 -68.75 -0.23 4.90 16 15 H 0.04 0.89 8.12 -51.93 -0.42 0.47 16 16 C 0.11 2.39 4.64 -82.41 -0.38 2.01 16 17 C -0.26 -4.80 10.72 -40.01 -0.43 -5.23 16 18 C 0.04 0.62 11.99 -17.22 -0.21 0.41 16 19 N -0.49 -8.19 7.36 30.44 0.22 -7.96 16 20 H 0.43 5.61 8.96 -182.60 -1.64 3.97 16 21 N -0.26 -5.64 11.08 33.67 0.37 -5.27 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 23 H 0.07 1.61 6.97 -51.93 -0.36 1.25 16 24 H 0.02 0.54 6.65 -51.93 -0.35 0.19 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 257.79 15.07 3.88 3.88 Total: -1.00 -33.49 257.79 -7.46 -40.95 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.71 Total: 1.01 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.94 Total: -8.16 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.96 Total: -54.97 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.65 Total: 17.29 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.49 -7.46 -40.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334283864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.408 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds